Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.56■□□□□ 0.4
MSX2P35548 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.56■□□□□ 0.4
MSX2P35548 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MSX2P35548 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.56■□□□□ 0.4
MSX2P35548 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
MSX2P35548 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 CDCA4P2-201ENST00000441182 718 ntBASIC17.55■□□□□ 0.4
MSX2P35548 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.55■□□□□ 0.4
MSX2P35548 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.55■□□□□ 0.4
MSX2P35548 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.55■□□□□ 0.4
MSX2P35548 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
MSX2P35548 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MSX2P35548 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.55■□□□□ 0.4
MSX2P35548 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 NKILA-202ENST00000614771 2598 ntBASIC17.54■□□□□ 0.4
MSX2P35548 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.54■□□□□ 0.4
MSX2P35548 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 MYLKP1-201ENST00000509077 1580 ntBASIC17.54■□□□□ 0.4
MSX2P35548 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.54■□□□□ 0.4
MSX2P35548 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.54■□□□□ 0.4
MSX2P35548 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.54■□□□□ 0.4
MSX2P35548 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
MSX2P35548 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
MSX2P35548 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 SOX15-203ENST00000570788 1093 ntBASIC17.54■□□□□ 0.4
MSX2P35548 AC022517.1-201ENST00000592429 346 ntBASIC17.54■□□□□ 0.4
MSX2P35548 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.54■□□□□ 0.4
MSX2P35548 AC092118.2-201ENST00000613495 667 ntBASIC17.54■□□□□ 0.4
MSX2P35548 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.54■□□□□ 0.4
MSX2P35548 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MSX2P35548 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MSX2P35548 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 KRT8P11-201ENST00000409686 1436 ntBASIC17.54■□□□□ 0.4
MSX2P35548 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MSX2P35548 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.53■□□□□ 0.4
MSX2P35548 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.53■□□□□ 0.4
MSX2P35548 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.53■□□□□ 0.4
MSX2P35548 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
MSX2P35548 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MSX2P35548 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms