Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.93■□□□□ 0.62
VCANP13611 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.93■□□□□ 0.62
VCANP13611 AC008761.3-201ENST00000624803 892 ntBASIC18.93■□□□□ 0.62
VCANP13611 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
VCANP13611 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCANP13611 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.92■□□□□ 0.62
VCANP13611 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 RNA5SP421-201ENST00000516864 134 ntBASIC18.92■□□□□ 0.62
VCANP13611 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.92■□□□□ 0.62
VCANP13611 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.92■□□□□ 0.62
VCANP13611 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.92■□□□□ 0.62
VCANP13611 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
VCANP13611 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.92■□□□□ 0.62
VCANP13611 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.92■□□□□ 0.62
VCANP13611 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCANP13611 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.92■□□□□ 0.62
VCANP13611 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.92■□□□□ 0.62
VCANP13611 INGX-202ENST00000489074 768 ntBASIC18.92■□□□□ 0.62
VCANP13611 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VCANP13611 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.92■□□□□ 0.62
VCANP13611 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VCANP13611 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
VCANP13611 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.91■□□□□ 0.62
VCANP13611 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VCANP13611 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.91■□□□□ 0.62
VCANP13611 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.91■□□□□ 0.62
VCANP13611 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.91■□□□□ 0.62
VCANP13611 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.91■□□□□ 0.62
VCANP13611 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCANP13611 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 LINC00628-201ENST00000628516 1289 ntBASIC18.9■□□□□ 0.62
VCANP13611 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.9■□□□□ 0.62
VCANP13611 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.9■□□□□ 0.62
VCANP13611 LAGE3P1-201ENST00000425356 484 ntBASIC18.9■□□□□ 0.62
VCANP13611 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCANP13611 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VCANP13611 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.9■□□□□ 0.62
VCANP13611 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.9■□□□□ 0.62
VCANP13611 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
VCANP13611 AC125634.1-201ENST00000438758 1403 ntBASIC18.89■□□□□ 0.62
VCANP13611 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
VCANP13611 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VCANP13611 CR383656.12-201ENST00000549567 513 ntBASIC18.89■□□□□ 0.61
VCANP13611 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.89■□□□□ 0.61
VCANP13611 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VCANP13611 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCANP13611 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VCANP13611 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VCANP13611 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.89■□□□□ 0.61
VCANP13611 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.89■□□□□ 0.61
VCANP13611 AL513210.1-201ENST00000629608 234 ntBASIC18.89■□□□□ 0.61
VCANP13611 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
VCANP13611 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms