Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CLDN9O95484 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC17.8■□□□□ 0.44
CLDN9O95484 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 AC010653.2-201ENST00000623505 997 ntBASIC17.8■□□□□ 0.44
CLDN9O95484 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.8■□□□□ 0.44
CLDN9O95484 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.8■□□□□ 0.44
CLDN9O95484 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN9O95484 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN9O95484 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.8■□□□□ 0.44
CLDN9O95484 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CLDN9O95484 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.79■□□□□ 0.44
CLDN9O95484 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 MIR149-201ENST00000384879 89 ntBASIC17.79■□□□□ 0.44
CLDN9O95484 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.79■□□□□ 0.44
CLDN9O95484 EGLN1P1-201ENST00000531623 762 ntBASIC17.79■□□□□ 0.44
CLDN9O95484 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.79■□□□□ 0.44
CLDN9O95484 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.79■□□□□ 0.44
CLDN9O95484 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
CLDN9O95484 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 AC009102.3-201ENST00000623118 1491 ntBASIC17.79■□□□□ 0.44
CLDN9O95484 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.79■□□□□ 0.44
CLDN9O95484 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLDN9O95484 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLDN9O95484 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.78■□□□□ 0.44
CLDN9O95484 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.78■□□□□ 0.44
CLDN9O95484 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 SDHAP2-201ENST00000455183 2001 ntBASIC17.78■□□□□ 0.44
CLDN9O95484 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.78■□□□□ 0.44
CLDN9O95484 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.78■□□□□ 0.44
CLDN9O95484 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
CLDN9O95484 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CLDN9O95484 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.78■□□□□ 0.44
CLDN9O95484 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
CLDN9O95484 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.78■□□□□ 0.44
CLDN9O95484 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.78■□□□□ 0.44
CLDN9O95484 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLDN9O95484 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.77■□□□□ 0.44
CLDN9O95484 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 AC099343.3-201ENST00000605834 2503 ntBASIC17.77■□□□□ 0.44
CLDN9O95484 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 REXO1L9P-201ENST00000604264 2108 ntBASIC17.77■□□□□ 0.44
CLDN9O95484 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLDN9O95484 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms