Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC27.46■■□□□ 1.99
RAPGEF3O95398 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
RAPGEF3O95398 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
RAPGEF3O95398 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC27.45■■□□□ 1.99
RAPGEF3O95398 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC27.45■■□□□ 1.98
RAPGEF3O95398 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RAPGEF3O95398 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC27.45■■□□□ 1.98
RAPGEF3O95398 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC27.45■■□□□ 1.98
RAPGEF3O95398 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC27.45■■□□□ 1.98
RAPGEF3O95398 C20orf181-201ENST00000623918 480 ntBASIC27.45■■□□□ 1.98
RAPGEF3O95398 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.98
RAPGEF3O95398 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
RAPGEF3O95398 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
RAPGEF3O95398 AC007375.3-201ENST00000600936 2314 ntBASIC27.45■■□□□ 1.98
RAPGEF3O95398 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RAPGEF3O95398 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC27.44■■□□□ 1.98
RAPGEF3O95398 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
RAPGEF3O95398 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC27.44■■□□□ 1.98
RAPGEF3O95398 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC27.44■■□□□ 1.98
RAPGEF3O95398 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
RAPGEF3O95398 AC002310.6-201ENST00000624451 1377 ntBASIC27.44■■□□□ 1.98
RAPGEF3O95398 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
RAPGEF3O95398 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 BCRP1-201ENST00000444246 691 ntBASIC27.43■■□□□ 1.98
RAPGEF3O95398 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 HLA-J-202ENST00000469281 1241 ntBASIC27.43■■□□□ 1.98
RAPGEF3O95398 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 SDCCAG3P1-201ENST00000589292 1150 ntBASIC27.43■■□□□ 1.98
RAPGEF3O95398 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC27.43■■□□□ 1.98
RAPGEF3O95398 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
RAPGEF3O95398 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 CD82-202ENST00000342935 967 ntTSL 5 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 MIR149-201ENST00000384879 89 ntBASIC27.42■■□□□ 1.98
RAPGEF3O95398 CTNS-203ENST00000399306 803 ntTSL 3 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 ATP6V0CP3-201ENST00000417255 467 ntBASIC27.42■■□□□ 1.98
RAPGEF3O95398 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 ETFA-208ENST00000559602 792 ntTSL 3 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC27.42■■□□□ 1.98
RAPGEF3O95398 AL078644.1-201ENST00000609881 752 ntBASIC27.42■■□□□ 1.98
RAPGEF3O95398 AC005593.1-201ENST00000624894 515 ntBASIC27.42■■□□□ 1.98
RAPGEF3O95398 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
RAPGEF3O95398 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 MTMR9LP-203ENST00000426597 1545 ntBASIC27.41■■□□□ 1.98
RAPGEF3O95398 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 NFYC-AS1-201ENST00000606277 1687 ntBASIC27.41■■□□□ 1.98
RAPGEF3O95398 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 AL513190.1-201ENST00000621254 727 ntBASIC27.41■■□□□ 1.98
RAPGEF3O95398 MIR1199-201ENST00000621445 119 ntBASIC27.41■■□□□ 1.98
RAPGEF3O95398 AC093028.1-201ENST00000622998 982 ntBASIC27.41■■□□□ 1.98
RAPGEF3O95398 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC27.41■■□□□ 1.98
RAPGEF3O95398 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
RAPGEF3O95398 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
RAPGEF3O95398 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
RAPGEF3O95398 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC27.4■■□□□ 1.98
RAPGEF3O95398 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RAPGEF3O95398 FP475955.4-201ENST00000623131 1990 ntBASIC27.4■■□□□ 1.98
RAPGEF3O95398 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
RAPGEF3O95398 AL024508.2-201ENST00000607749 1894 ntBASIC27.4■■□□□ 1.98
RAPGEF3O95398 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
RAPGEF3O95398 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.98
RAPGEF3O95398 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC27.39■■□□□ 1.98
RAPGEF3O95398 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC27.39■■□□□ 1.98
RAPGEF3O95398 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
RAPGEF3O95398 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC27.39■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms