Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PRKNO60260 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
PRKNO60260 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
PRKNO60260 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 PCED1CP-201ENST00000419887 785 ntBASIC17.1■□□□□ 0.33
PRKNO60260 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
PRKNO60260 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.1■□□□□ 0.33
PRKNO60260 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
PRKNO60260 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.1■□□□□ 0.33
PRKNO60260 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PRKNO60260 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.1■□□□□ 0.33
PRKNO60260 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PRKNO60260 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.09■□□□□ 0.33
PRKNO60260 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
PRKNO60260 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.09■□□□□ 0.33
PRKNO60260 HLA-F-220ENST00000434407 884 ntBASIC17.09■□□□□ 0.33
PRKNO60260 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.09■□□□□ 0.33
PRKNO60260 AL136038.3-201ENST00000561909 1096 ntBASIC17.09■□□□□ 0.33
PRKNO60260 AL136038.4-201ENST00000603606 1261 ntBASIC17.09■□□□□ 0.33
PRKNO60260 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PRKNO60260 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 AL163051.1-201ENST00000569214 1512 ntBASIC17.09■□□□□ 0.33
PRKNO60260 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.09■□□□□ 0.33
PRKNO60260 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
PRKNO60260 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.09■□□□□ 0.33
PRKNO60260 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PRKNO60260 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PRKNO60260 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
PRKNO60260 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PRKNO60260 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PRKNO60260 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.08■□□□□ 0.33
PRKNO60260 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
PRKNO60260 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PRKNO60260 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.08■□□□□ 0.32
PRKNO60260 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PRKNO60260 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.08■□□□□ 0.32
PRKNO60260 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.08■□□□□ 0.32
PRKNO60260 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.08■□□□□ 0.32
PRKNO60260 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.08■□□□□ 0.32
PRKNO60260 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PRKNO60260 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.08■□□□□ 0.32
PRKNO60260 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PRKNO60260 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.08■□□□□ 0.32
PRKNO60260 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.08■□□□□ 0.32
PRKNO60260 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms