Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AL353692.3-201ENST00000407031 1396 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 POM121L3P-201ENST00000419331 1163 ntBASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 RNPS1P1-201ENST00000507437 918 ntBASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMD1Q9UGP4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 MIR5100-201ENST00000579544 119 ntBASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 AC006333.2-201ENST00000607957 2099 ntBASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMD1Q9UGP4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 AC116562.4-201ENST00000641316 2276 ntBASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.14■□□□□ 0.66
LIMD1Q9UGP4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 RPL13AP23-201ENST00000480739 586 ntBASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 MIR3180-4-201ENST00000582223 153 ntBASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 AC243591.1-201ENST00000452967 1364 ntBASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMD1Q9UGP4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMD1Q9UGP4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms