Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CUEDC1Q9NWM3 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CUEDC1Q9NWM3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CUEDC1Q9NWM3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CUEDC1Q9NWM3 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 KRT18P48-201ENST00000434763 852 ntBASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 AL121894.2-201ENST00000602977 491 ntBASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 AC140113.3-201ENST00000605663 199 ntBASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 AC009113.1-201ENST00000570267 2443 ntBASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CUEDC1Q9NWM3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 AC010240.3-201ENST00000607688 395 ntBASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CUEDC1Q9NWM3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 AC020763.4-201ENST00000623414 4170 ntBASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.78■□□□□ 0.44
CUEDC1Q9NWM3 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms