Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.03■□□□□ 0.16
COL12A1Q99715 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 MKNK2P1-201ENST00000437526 628 ntBASIC16.03■□□□□ 0.16
COL12A1Q99715 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.03■□□□□ 0.16
COL12A1Q99715 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.03■□□□□ 0.16
COL12A1Q99715 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL12A1Q99715 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
COL12A1Q99715 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.02■□□□□ 0.16
COL12A1Q99715 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 AC005082.1-201ENST00000413042 2259 ntBASIC16.02■□□□□ 0.16
COL12A1Q99715 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.02■□□□□ 0.16
COL12A1Q99715 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL12A1Q99715 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.02■□□□□ 0.16
COL12A1Q99715 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.02■□□□□ 0.16
COL12A1Q99715 KRT89P-201ENST00000620027 1478 ntBASIC16.02■□□□□ 0.16
COL12A1Q99715 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.02■□□□□ 0.16
COL12A1Q99715 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.02■□□□□ 0.15
COL12A1Q99715 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.02■□□□□ 0.15
COL12A1Q99715 AC034236.2-201ENST00000606662 1610 ntBASIC16.02■□□□□ 0.15
COL12A1Q99715 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 AC006333.2-201ENST00000607957 2099 ntBASIC16.02■□□□□ 0.15
COL12A1Q99715 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.02■□□□□ 0.15
COL12A1Q99715 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 AL138831.2-201ENST00000606564 490 ntBASIC16.02■□□□□ 0.15
COL12A1Q99715 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.02■□□□□ 0.15
COL12A1Q99715 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.02■□□□□ 0.15
COL12A1Q99715 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL12A1Q99715 AL157384.1-201ENST00000445995 2473 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.01■□□□□ 0.15
COL12A1Q99715 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 UGT1A2P-201ENST00000454886 866 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 AP005018.1-201ENST00000525475 301 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.01■□□□□ 0.15
COL12A1Q99715 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.01■□□□□ 0.15
COL12A1Q99715 AC107918.4-202ENST00000641623 219 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.01■□□□□ 0.15
COL12A1Q99715 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
COL12A1Q99715 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 AC108751.1-201ENST00000490852 363 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 AC073592.5-201ENST00000624854 528 ntBASIC16.01■□□□□ 0.15
COL12A1Q99715 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
COL12A1Q99715 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.01■□□□□ 0.15
COL12A1Q99715 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL12A1Q99715 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL12A1Q99715 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.01■□□□□ 0.15
COL12A1Q99715 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16■□□□□ 0.15
COL12A1Q99715 AC022494.1-201ENST00000466044 728 ntBASIC16■□□□□ 0.15
COL12A1Q99715 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16■□□□□ 0.15
COL12A1Q99715 AL390955.2-201ENST00000603032 514 ntBASIC16■□□□□ 0.15
COL12A1Q99715 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 GAS2L1P1-201ENST00000420145 1480 ntBASIC16■□□□□ 0.15
COL12A1Q99715 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL12A1Q99715 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16■□□□□ 0.15
COL12A1Q99715 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms