Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PPP4R4Q6NUP7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PPP4R4Q6NUP7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 RPS2P4-201ENST00000476944 856 ntBASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 AC008550.1-201ENST00000511500 884 ntBASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PPP4R4Q6NUP7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms