Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.32■■□□□ 1
KRT40Q6A162 AL162741.1-201ENST00000565563 1558 ntBASIC21.32■■□□□ 1
KRT40Q6A162 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.32■■□□□ 1
KRT40Q6A162 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.32■■□□□ 1
KRT40Q6A162 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 AC063952.2-201ENST00000498792 1227 ntBASIC21.32■■□□□ 1
KRT40Q6A162 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.32■■□□□ 1
KRT40Q6A162 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.32■■□□□ 1
KRT40Q6A162 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.32■■□□□ 1
KRT40Q6A162 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.32■■□□□ 1
KRT40Q6A162 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
KRT40Q6A162 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.32■■□□□ 1
KRT40Q6A162 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
KRT40Q6A162 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.32■■□□□ 1
KRT40Q6A162 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
KRT40Q6A162 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.31■■□□□ 1
KRT40Q6A162 ESPNP-201ENST00000270691 2015 ntBASIC21.31■■□□□ 1
KRT40Q6A162 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
KRT40Q6A162 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.31■■□□□ 1
KRT40Q6A162 ABALON-201ENST00000629058 1903 ntBASIC21.31■■□□□ 1
KRT40Q6A162 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
KRT40Q6A162 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
KRT40Q6A162 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
KRT40Q6A162 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.3■■□□□ 1
KRT40Q6A162 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.3■■□□□ 1
KRT40Q6A162 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.3■■□□□ 1
KRT40Q6A162 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.3■■□□□ 1
KRT40Q6A162 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.3■■□□□ 1
KRT40Q6A162 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.3■■□□□ 1
KRT40Q6A162 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.3■■□□□ 1
KRT40Q6A162 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.3■■□□□ 1
KRT40Q6A162 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
KRT40Q6A162 KRT8P7-201ENST00000533003 1432 ntBASIC21.29■■□□□ 1
KRT40Q6A162 AL163051.1-201ENST00000569214 1512 ntBASIC21.29■■□□□ 1
KRT40Q6A162 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.29■■□□□ 1
KRT40Q6A162 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
KRT40Q6A162 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.29■■□□□ 1
KRT40Q6A162 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.29■■□□□ 1
KRT40Q6A162 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.29■■□□□ 1
KRT40Q6A162 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms