Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AC009093.7-201ENST00000623853 1223 ntBASIC10.01□□□□□ -0.81
UBR4Q5T4S7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 ETFA-208ENST00000559602 792 ntTSL 3 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
UBR4Q5T4S7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC10□□□□□ -0.81
UBR4Q5T4S7 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC10□□□□□ -0.81
UBR4Q5T4S7 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 ADH5P3-201ENST00000433842 1137 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 CNN2P2-201ENST00000443536 909 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 CNN2P3-201ENST00000450201 906 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC10□□□□□ -0.81
UBR4Q5T4S7 AL136317.3-201ENST00000618497 906 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 AC008556.1-201ENST00000610908 2040 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC10□□□□□ -0.81
UBR4Q5T4S7 TREML5P-201ENST00000421694 576 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC10□□□□□ -0.81
UBR4Q5T4S7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC10□□□□□ -0.81
UBR4Q5T4S7 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
UBR4Q5T4S7 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC10□□□□□ -0.81
UBR4Q5T4S7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC10□□□□□ -0.81
UBR4Q5T4S7 COX11-210ENST00000639671 696 ntBASIC10□□□□□ -0.81
UBR4Q5T4S7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC10□□□□□ -0.81
UBR4Q5T4S7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 AC067863.1-201ENST00000494933 530 ntBASIC9.99□□□□□ -0.81
UBR4Q5T4S7 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 MIR3180-4-201ENST00000582223 153 ntBASIC9.99□□□□□ -0.81
UBR4Q5T4S7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC9.99□□□□□ -0.81
UBR4Q5T4S7 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms