Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.26□□□□□ -0.29
PRKDCP78527 AC108073.2-201ENST00000464002 357 ntBASIC13.26□□□□□ -0.29
PRKDCP78527 AC006504.4-201ENST00000592118 1568 ntBASIC13.26□□□□□ -0.29
PRKDCP78527 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
PRKDCP78527 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PRKDCP78527 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC13.25□□□□□ -0.29
PRKDCP78527 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 AC136632.2-201ENST00000512891 861 ntBASIC13.25□□□□□ -0.29
PRKDCP78527 AP000344.2-201ENST00000512987 629 ntBASIC13.25□□□□□ -0.29
PRKDCP78527 AC051619.7-201ENST00000568314 623 ntBASIC13.25□□□□□ -0.29
PRKDCP78527 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.25□□□□□ -0.29
PRKDCP78527 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
PRKDCP78527 ME2-216ENST00000639850 2331 ntTSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 IGLL3P-201ENST00000412472 434 ntBASIC13.25□□□□□ -0.29
PRKDCP78527 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.25□□□□□ -0.29
PRKDCP78527 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
PRKDCP78527 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
PRKDCP78527 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.25□□□□□ -0.29
PRKDCP78527 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PRKDCP78527 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
PRKDCP78527 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.25□□□□□ -0.29
PRKDCP78527 AC105339.1-204ENST00000636249 355 ntBASIC13.25□□□□□ -0.29
PRKDCP78527 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC13.25□□□□□ -0.29
PRKDCP78527 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 DUX4L27-201ENST00000554796 1261 ntBASIC13.24□□□□□ -0.29
PRKDCP78527 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.24□□□□□ -0.29
PRKDCP78527 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 AC008761.3-201ENST00000624803 892 ntBASIC13.24□□□□□ -0.29
PRKDCP78527 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.24□□□□□ -0.29
PRKDCP78527 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.24□□□□□ -0.29
PRKDCP78527 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
PRKDCP78527 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC13.24□□□□□ -0.29
PRKDCP78527 BX005266.1-201ENST00000473402 457 ntBASIC13.24□□□□□ -0.29
PRKDCP78527 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC13.24□□□□□ -0.29
PRKDCP78527 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
PRKDCP78527 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
PRKDCP78527 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.23□□□□□ -0.29
PRKDCP78527 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 AC022145.2-201ENST00000598203 171 ntBASIC13.23□□□□□ -0.29
PRKDCP78527 MIR6799-201ENST00000620297 69 ntBASIC13.23□□□□□ -0.29
PRKDCP78527 AC005593.1-201ENST00000624894 515 ntBASIC13.23□□□□□ -0.29
PRKDCP78527 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
PRKDCP78527 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
PRKDCP78527 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms