Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A4P53420 UPF3AP3-201ENST00000420996 769 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A4P53420 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A4P53420 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 AC006333.2-201ENST00000607957 2099 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
COL4A4P53420 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A4P53420 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 MIR564-202ENST00000385049 94 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 MIR940-201ENST00000401276 94 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.65■□□□□ 0.74
COL4A4P53420 AC034105.1-201ENST00000563488 319 ntBASIC19.65■□□□□ 0.74
COL4A4P53420 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A4P53420 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.65■□□□□ 0.74
COL4A4P53420 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
COL4A4P53420 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A4P53420 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A4P53420 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
COL4A4P53420 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A4P53420 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A4P53420 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL4A4P53420 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A4P53420 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.64■□□□□ 0.73
COL4A4P53420 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
COL4A4P53420 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
COL4A4P53420 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A4P53420 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A4P53420 AC027796.2-201ENST00000575326 344 ntBASIC19.64■□□□□ 0.73
COL4A4P53420 AC011840.4-201ENST00000578471 627 ntBASIC19.64■□□□□ 0.73
COL4A4P53420 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.64■□□□□ 0.73
COL4A4P53420 AC083906.6-201ENST00000641366 219 ntBASIC19.64■□□□□ 0.73
COL4A4P53420 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC19.64■□□□□ 0.73
COL4A4P53420 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL4A4P53420 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
COL4A4P53420 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL4A4P53420 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A4P53420 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 AC034236.2-201ENST00000606662 1610 ntBASIC19.63■□□□□ 0.73
COL4A4P53420 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
COL4A4P53420 RPSAP43-201ENST00000402237 625 ntBASIC19.63■□□□□ 0.73
COL4A4P53420 GPX1P2-201ENST00000429271 606 ntBASIC19.63■□□□□ 0.73
COL4A4P53420 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.63■□□□□ 0.73
COL4A4P53420 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.63■□□□□ 0.73
COL4A4P53420 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.63■□□□□ 0.73
COL4A4P53420 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.63■□□□□ 0.73
COL4A4P53420 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.63■□□□□ 0.73
COL4A4P53420 AL355877.3-201ENST00000622820 899 ntBASIC19.63■□□□□ 0.73
COL4A4P53420 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.63■□□□□ 0.73
COL4A4P53420 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.63■□□□□ 0.73
COL4A4P53420 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 ZNF259P1-201ENST00000407656 1365 ntBASIC19.63■□□□□ 0.73
COL4A4P53420 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL4A4P53420 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL4A4P53420 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL4A4P53420 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 YBX2P1-201ENST00000394192 760 ntBASIC19.62■□□□□ 0.73
COL4A4P53420 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.62■□□□□ 0.73
COL4A4P53420 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.62■□□□□ 0.73
COL4A4P53420 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL4A4P53420 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.62■□□□□ 0.73
COL4A4P53420 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.62■□□□□ 0.73
COL4A4P53420 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
COL4A4P53420 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL4A4P53420 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms