Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.63■□□□□ 0.89
HTTP42858 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.63■□□□□ 0.89
HTTP42858 AC005829.1-201ENST00000570002 483 ntBASIC20.63■□□□□ 0.89
HTTP42858 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.63■□□□□ 0.89
HTTP42858 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC20.63■□□□□ 0.89
HTTP42858 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.63■□□□□ 0.89
HTTP42858 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.63■□□□□ 0.89
HTTP42858 KRT18P2-201ENST00000447938 1258 ntBASIC20.63■□□□□ 0.89
HTTP42858 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.63■□□□□ 0.89
HTTP42858 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.63■□□□□ 0.89
HTTP42858 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HTTP42858 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HTTP42858 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HTTP42858 AC112777.1-201ENST00000540175 1423 ntBASIC20.63■□□□□ 0.89
HTTP42858 LINC01006-201ENST00000333319 2292 ntBASIC20.63■□□□□ 0.89
HTTP42858 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 ABCD1P5-201ENST00000445663 754 ntBASIC20.62■□□□□ 0.89
HTTP42858 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.62■□□□□ 0.89
HTTP42858 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.62■□□□□ 0.89
HTTP42858 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HTTP42858 COPE-202ENST00000349893 948 ntTSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.62■□□□□ 0.89
HTTP42858 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.62■□□□□ 0.89
HTTP42858 AL078644.1-201ENST00000609881 752 ntBASIC20.62■□□□□ 0.89
HTTP42858 AC092865.6-201ENST00000642101 219 ntBASIC20.62■□□□□ 0.89
HTTP42858 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.62■□□□□ 0.89
HTTP42858 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 ELL2P1-201ENST00000413990 1906 ntBASIC20.62■□□□□ 0.89
HTTP42858 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HTTP42858 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.62■□□□□ 0.89
HTTP42858 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.62■□□□□ 0.89
HTTP42858 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
HTTP42858 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
HTTP42858 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.61■□□□□ 0.89
HTTP42858 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 AC113404.2-201ENST00000507884 177 ntBASIC20.61■□□□□ 0.89
HTTP42858 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC20.61■□□□□ 0.89
HTTP42858 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.61■□□□□ 0.89
HTTP42858 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HTTP42858 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
HTTP42858 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.61■□□□□ 0.89
HTTP42858 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
HTTP42858 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC20.61■□□□□ 0.89
HTTP42858 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.61■□□□□ 0.89
HTTP42858 AC011467.4-201ENST00000594891 528 ntBASIC20.61■□□□□ 0.89
HTTP42858 MTDHP4-201ENST00000600287 670 ntBASIC20.61■□□□□ 0.89
HTTP42858 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.61■□□□□ 0.89
HTTP42858 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HTTP42858 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 LAGE3P1-201ENST00000425356 484 ntBASIC20.6■□□□□ 0.89
HTTP42858 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.6■□□□□ 0.89
HTTP42858 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.6■□□□□ 0.89
HTTP42858 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.6■□□□□ 0.89
HTTP42858 AC064836.3-201ENST00000607928 673 ntBASIC20.6■□□□□ 0.89
HTTP42858 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 AC012676.1-201ENST00000574705 1949 ntBASIC20.6■□□□□ 0.89
HTTP42858 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HTTP42858 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.6■□□□□ 0.89
HTTP42858 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.6■□□□□ 0.89
HTTP42858 Z98044.1-201ENST00000632503 1764 ntBASIC20.6■□□□□ 0.89
HTTP42858 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.6■□□□□ 0.89
HTTP42858 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.6■□□□□ 0.89
HTTP42858 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.6■□□□□ 0.89
HTTP42858 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HTTP42858 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms