Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NOC2LP1-202ENST00000452600 2235 ntBASIC17.34■□□□□ 0.37
SOX3P41225 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 YBX1P2-201ENST00000489612 999 ntBASIC17.34■□□□□ 0.37
SOX3P41225 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.34■□□□□ 0.37
SOX3P41225 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.34■□□□□ 0.37
SOX3P41225 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.34■□□□□ 0.37
SOX3P41225 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.34■□□□□ 0.37
SOX3P41225 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
SOX3P41225 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.34■□□□□ 0.37
SOX3P41225 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SOX3P41225 CR769767.2-201ENST00000622735 460 ntBASIC17.34■□□□□ 0.37
SOX3P41225 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
SOX3P41225 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SOX3P41225 AP000997.3-201ENST00000623333 2250 ntBASIC17.33■□□□□ 0.37
SOX3P41225 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX3P41225 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
SOX3P41225 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.33■□□□□ 0.37
SOX3P41225 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.33■□□□□ 0.37
SOX3P41225 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.33■□□□□ 0.37
SOX3P41225 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX3P41225 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SOX3P41225 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SOX3P41225 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
SOX3P41225 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SOX3P41225 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.33■□□□□ 0.36
SOX3P41225 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SOX3P41225 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
SOX3P41225 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.33■□□□□ 0.36
SOX3P41225 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 MCCD1P1-208ENST00000445732 328 ntBASIC17.33■□□□□ 0.36
SOX3P41225 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.33■□□□□ 0.36
SOX3P41225 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.33■□□□□ 0.36
SOX3P41225 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.33■□□□□ 0.36
SOX3P41225 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.33■□□□□ 0.36
SOX3P41225 AL023973.1-201ENST00000624619 620 ntBASIC17.33■□□□□ 0.36
SOX3P41225 AL590326.2-201ENST00000625139 305 ntBASIC17.33■□□□□ 0.36
SOX3P41225 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.33■□□□□ 0.36
SOX3P41225 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
SOX3P41225 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX3P41225 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 AC036111.1-201ENST00000533973 1582 ntBASIC17.32■□□□□ 0.36
SOX3P41225 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX3P41225 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
SOX3P41225 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX3P41225 NOC2LP2-201ENST00000407594 1944 ntBASIC17.32■□□□□ 0.36
SOX3P41225 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.32■□□□□ 0.36
SOX3P41225 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX3P41225 WWOX-216ENST00000569818 525 ntBASIC17.32■□□□□ 0.36
SOX3P41225 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.32■□□□□ 0.36
SOX3P41225 AL445228.2-201ENST00000605589 952 ntBASIC17.32■□□□□ 0.36
SOX3P41225 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SOX3P41225 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.32■□□□□ 0.36
SOX3P41225 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SOX3P41225 AC068880.1-201ENST00000507289 2297 ntBASIC17.32■□□□□ 0.36
SOX3P41225 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX3P41225 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX3P41225 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SOX3P41225 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
SOX3P41225 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 AL512353.2-201ENST00000448759 1962 ntBASIC17.31■□□□□ 0.36
SOX3P41225 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX3P41225 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX3P41225 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms