Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RASA4DP-201ENST00000460726 1199 ntBASIC14.25□□□□□ -0.13
HOXD3P31249 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD3P31249 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 PRELID1P1-202ENST00000567272 903 ntBASIC14.25□□□□□ -0.13
HOXD3P31249 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD3P31249 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD3P31249 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD3P31249 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD3P31249 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HOXD3P31249 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD3P31249 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXD3P31249 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.24□□□□□ -0.13
HOXD3P31249 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXD3P31249 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC14.24□□□□□ -0.13
HOXD3P31249 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 AC104390.1-201ENST00000555663 520 ntBASIC14.24□□□□□ -0.13
HOXD3P31249 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXD3P31249 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXD3P31249 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXD3P31249 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 AP000974.1-201ENST00000623909 2387 ntBASIC14.23□□□□□ -0.13
HOXD3P31249 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HOXD3P31249 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD3P31249 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD3P31249 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD3P31249 MIR3652-201ENST00000579335 131 ntBASIC14.23□□□□□ -0.13
HOXD3P31249 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.23□□□□□ -0.13
HOXD3P31249 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 AC010240.3-201ENST00000607688 395 ntBASIC14.23□□□□□ -0.13
HOXD3P31249 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 CYP51A1P1-201ENST00000492267 1507 ntBASIC14.23□□□□□ -0.13
HOXD3P31249 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.23□□□□□ -0.13
HOXD3P31249 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HOXD3P31249 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.23□□□□□ -0.13
HOXD3P31249 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.22□□□□□ -0.13
HOXD3P31249 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC14.22□□□□□ -0.13
HOXD3P31249 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.22□□□□□ -0.13
HOXD3P31249 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HOXD3P31249 AP000593.1-201ENST00000393668 712 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms