Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC007952.6-201ENST00000573168 2673 ntBASIC17.62■□□□□ 0.41
COL5A1P20908 AC003957.1-201ENST00000625108 2673 ntBASIC17.62■□□□□ 0.41
COL5A1P20908 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
COL5A1P20908 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.62■□□□□ 0.41
COL5A1P20908 INTS4P1-201ENST00000438455 1935 ntBASIC17.62■□□□□ 0.41
COL5A1P20908 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A1P20908 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 TP73-AS1-210ENST00000637775 1455 ntBASIC17.61■□□□□ 0.41
COL5A1P20908 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL5A1P20908 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.61■□□□□ 0.41
COL5A1P20908 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 FAM220CP-201ENST00000395253 831 ntBASIC17.61■□□□□ 0.41
COL5A1P20908 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.61■□□□□ 0.41
COL5A1P20908 AC009533.2-201ENST00000543664 586 ntBASIC17.61■□□□□ 0.41
COL5A1P20908 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.61■□□□□ 0.41
COL5A1P20908 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.61■□□□□ 0.41
COL5A1P20908 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.6■□□□□ 0.41
COL5A1P20908 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.6■□□□□ 0.41
COL5A1P20908 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 AL024508.2-201ENST00000607749 1894 ntBASIC17.6■□□□□ 0.41
COL5A1P20908 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 MTDHP3-201ENST00000594186 672 ntBASIC17.6■□□□□ 0.41
COL5A1P20908 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.6■□□□□ 0.41
COL5A1P20908 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL5A1P20908 ZNF259P1-201ENST00000407656 1365 ntBASIC17.59■□□□□ 0.41
COL5A1P20908 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A1P20908 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
COL5A1P20908 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A1P20908 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.59■□□□□ 0.41
COL5A1P20908 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.59■□□□□ 0.41
COL5A1P20908 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.59■□□□□ 0.41
COL5A1P20908 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.59■□□□□ 0.41
COL5A1P20908 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 AP005117.1-201ENST00000584346 1413 ntBASIC17.59■□□□□ 0.41
COL5A1P20908 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
COL5A1P20908 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.59■□□□□ 0.41
COL5A1P20908 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL5A1P20908 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
COL5A1P20908 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.58■□□□□ 0.41
COL5A1P20908 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.58■□□□□ 0.41
COL5A1P20908 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.58■□□□□ 0.41
COL5A1P20908 AL139288.1-201ENST00000623748 933 ntBASIC17.58■□□□□ 0.41
COL5A1P20908 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A1P20908 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL5A1P20908 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.58■□□□□ 0.41
COL5A1P20908 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.58■□□□□ 0.41
COL5A1P20908 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms