Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 NKILA-202ENST00000614771 2598 ntBASIC18.51■□□□□ 0.55
VIMP08670 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.51■□□□□ 0.55
VIMP08670 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.51■□□□□ 0.55
VIMP08670 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 AC073210.2-201ENST00000430369 194 ntBASIC18.51■□□□□ 0.55
VIMP08670 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.51■□□□□ 0.55
VIMP08670 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VIMP08670 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.51■□□□□ 0.55
VIMP08670 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
VIMP08670 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 AC011676.5-201ENST00000624864 2660 ntBASIC18.51■□□□□ 0.55
VIMP08670 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.51■□□□□ 0.55
VIMP08670 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VIMP08670 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
VIMP08670 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.5■□□□□ 0.55
VIMP08670 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 OR10C1-204ENST00000622521 1039 ntBASIC18.5■□□□□ 0.55
VIMP08670 AC068587.9-201ENST00000641814 219 ntBASIC18.5■□□□□ 0.55
VIMP08670 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.5■□□□□ 0.55
VIMP08670 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.5■□□□□ 0.55
VIMP08670 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.5■□□□□ 0.55
VIMP08670 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.5■□□□□ 0.55
VIMP08670 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.5■□□□□ 0.55
VIMP08670 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.5■□□□□ 0.55
VIMP08670 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VIMP08670 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
VIMP08670 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.49■□□□□ 0.55
VIMP08670 ZNRF2P3-201ENST00000424200 374 ntBASIC18.49■□□□□ 0.55
VIMP08670 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.49■□□□□ 0.55
VIMP08670 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 NFIC-211ENST00000641145 8399 ntBASIC18.49■□□□□ 0.55
VIMP08670 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
VIMP08670 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VIMP08670 AC008556.1-201ENST00000610908 2040 ntBASIC18.49■□□□□ 0.55
VIMP08670 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.49■□□□□ 0.55
VIMP08670 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.48■□□□□ 0.55
VIMP08670 AC011270.2-201ENST00000624293 2550 ntBASIC18.48■□□□□ 0.55
VIMP08670 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.48■□□□□ 0.55
VIMP08670 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.48■□□□□ 0.55
VIMP08670 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VIMP08670 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VIMP08670 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms