Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.46■■□□□ 1.19
COL4A1P02462 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC22.46■■□□□ 1.19
COL4A1P02462 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
COL4A1P02462 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
COL4A1P02462 RCN1P2-201ENST00000398357 915 ntBASIC22.46■■□□□ 1.19
COL4A1P02462 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.46■■□□□ 1.19
COL4A1P02462 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC22.46■■□□□ 1.19
COL4A1P02462 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
COL4A1P02462 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.46■■□□□ 1.19
COL4A1P02462 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 DDT-203ENST00000403754 569 ntTSL 3 BASIC22.46■■□□□ 1.19
COL4A1P02462 DDT-206ENST00000430101 573 ntTSL 2 BASIC22.46■■□□□ 1.19
COL4A1P02462 FAM197Y8-203ENST00000450145 560 ntBASIC22.46■■□□□ 1.19
COL4A1P02462 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC22.46■■□□□ 1.19
COL4A1P02462 CALM1-205ENST00000553542 877 ntTSL 5 BASIC22.46■■□□□ 1.19
COL4A1P02462 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
COL4A1P02462 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22.45■■□□□ 1.19
COL4A1P02462 ANO7L1-203ENST00000602586 1720 ntBASIC22.45■■□□□ 1.19
COL4A1P02462 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL4A1P02462 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL4A1P02462 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
COL4A1P02462 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.45■■□□□ 1.18
COL4A1P02462 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
COL4A1P02462 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
COL4A1P02462 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 AC068472.1-201ENST00000474589 881 ntBASIC22.45■■□□□ 1.18
COL4A1P02462 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC22.45■■□□□ 1.18
COL4A1P02462 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC22.45■■□□□ 1.18
COL4A1P02462 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC22.45■■□□□ 1.18
COL4A1P02462 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 AF228730.7-201ENST00000641842 219 ntBASIC22.45■■□□□ 1.18
COL4A1P02462 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
COL4A1P02462 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC22.45■■□□□ 1.18
COL4A1P02462 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
COL4A1P02462 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC22.44■■□□□ 1.18
COL4A1P02462 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 AC112777.1-201ENST00000540175 1423 ntBASIC22.44■■□□□ 1.18
COL4A1P02462 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 MIR574-201ENST00000385209 96 ntBASIC22.44■■□□□ 1.18
COL4A1P02462 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 AL590627.1-203ENST00000421194 1026 ntBASIC22.44■■□□□ 1.18
COL4A1P02462 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC22.44■■□□□ 1.18
COL4A1P02462 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.44■■□□□ 1.18
COL4A1P02462 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
COL4A1P02462 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
COL4A1P02462 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.44■■□□□ 1.18
COL4A1P02462 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 MIR5100-201ENST00000579544 119 ntBASIC22.43■■□□□ 1.18
COL4A1P02462 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC22.43■■□□□ 1.18
COL4A1P02462 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC22.43■■□□□ 1.18
COL4A1P02462 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC22.43■■□□□ 1.18
COL4A1P02462 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.43■■□□□ 1.18
COL4A1P02462 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
COL4A1P02462 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC22.43■■□□□ 1.18
COL4A1P02462 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC22.43■■□□□ 1.18
COL4A1P02462 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 MED22-202ENST00000371999 987 ntTSL 3 BASIC22.42■■□□□ 1.18
COL4A1P02462 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 AL031284.1-201ENST00000419297 478 ntBASIC22.42■■□□□ 1.18
COL4A1P02462 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC22.42■■□□□ 1.18
COL4A1P02462 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC22.42■■□□□ 1.18
COL4A1P02462 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC22.42■■□□□ 1.18
COL4A1P02462 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
COL4A1P02462 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 TP73-AS1-210ENST00000637775 1455 ntBASIC22.42■■□□□ 1.18
COL4A1P02462 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
COL4A1P02462 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC22.42■■□□□ 1.18
COL4A1P02462 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms