Protein–RNA interactions for Protein: Q5R1I4

Trav6-2, T cell receptor alpha variable 6-2 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-2Q5R1I4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-2Q5R1I4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav6-2Q5R1I4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Gm44428-201ENSMUST00000204474 874 ntBASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trav6-2Q5R1I4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trav6-2Q5R1I4 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trav6-2Q5R1I4 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.19■□□□□ 0.82
Trav6-2Q5R1I4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.18■□□□□ 0.82
Trav6-2Q5R1I4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Trav6-2Q5R1I4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.18■□□□□ 0.82
Trav6-2Q5R1I4 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.18■□□□□ 0.82
Trav6-2Q5R1I4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav6-2Q5R1I4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Trav6-2Q5R1I4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6-2Q5R1I4 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6-2Q5R1I4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.16■□□□□ 0.82
Trav6-2Q5R1I4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Trav6-2Q5R1I4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Trav6-2Q5R1I4 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Trav6-2Q5R1I4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6-2Q5R1I4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Trav6-2Q5R1I4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Trav6-2Q5R1I4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Trav6-2Q5R1I4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6-2Q5R1I4 Gm5921-201ENSMUST00000075898 882 ntBASIC20.12■□□□□ 0.81
Trav6-2Q5R1I4 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Trav6-2Q5R1I4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Trav6-2Q5R1I4 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.11■□□□□ 0.81
Trav6-2Q5R1I4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.11■□□□□ 0.81
Trav6-2Q5R1I4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Trav6-2Q5R1I4 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
Trav6-2Q5R1I4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Trav6-2Q5R1I4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Trav6-2Q5R1I4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Trav6-2Q5R1I4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.08■□□□□ 0.8
Trav6-2Q5R1I4 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Trav6-2Q5R1I4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.06■□□□□ 0.8
Trav6-2Q5R1I4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-2Q5R1I4 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.06■□□□□ 0.8
Trav6-2Q5R1I4 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-2Q5R1I4 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Trav6-2Q5R1I4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trav6-2Q5R1I4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Trav6-2Q5R1I4 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Trav6-2Q5R1I4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Trav6-2Q5R1I4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.04■□□□□ 0.8
Trav6-2Q5R1I4 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Trav6-2Q5R1I4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Trav6-2Q5R1I4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav6-2Q5R1I4 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Trav6-2Q5R1I4 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav6-2Q5R1I4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Trav6-2Q5R1I4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC20.02■□□□□ 0.8
Trav6-2Q5R1I4 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Trav6-2Q5R1I4 Gm5812-201ENSMUST00000061073 957 ntBASIC20.02■□□□□ 0.8
Trav6-2Q5R1I4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC20.02■□□□□ 0.79
Trav6-2Q5R1I4 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Trav6-2Q5R1I4 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Trav6-2Q5R1I4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav6-2Q5R1I4 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Trav6-2Q5R1I4 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Trav6-2Q5R1I4 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC20■□□□□ 0.79
Trav6-2Q5R1I4 AC117769.4-201ENSMUST00000225679 685 ntBASIC20■□□□□ 0.79
Trav6-2Q5R1I4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Trav6-2Q5R1I4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-2Q5R1I4 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-2Q5R1I4 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-2Q5R1I4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Trav6-2Q5R1I4 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.97■□□□□ 0.79
Trav6-2Q5R1I4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC19.97■□□□□ 0.79
Trav6-2Q5R1I4 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-2Q5R1I4 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Trav6-2Q5R1I4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Trav6-2Q5R1I4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Trav6-2Q5R1I4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6-2Q5R1I4 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Trav6-2Q5R1I4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Trav6-2Q5R1I4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Trav6-2Q5R1I4 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6-2Q5R1I4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Trav6-2Q5R1I4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms