Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Sox3P53784 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Sox3P53784 Gm15546-201ENSMUST00000122095 826 ntBASIC21.59■■□□□ 1.05
Sox3P53784 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sox3P53784 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sox3P53784 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sox3P53784 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sox3P53784 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sox3P53784 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sox3P53784 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.58■■□□□ 1.05
Sox3P53784 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sox3P53784 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Sox3P53784 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Sox3P53784 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Sox3P53784 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Sox3P53784 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
Sox3P53784 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Sox3P53784 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Sox3P53784 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Sox3P53784 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Sox3P53784 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Sox3P53784 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Sox3P53784 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Sox3P53784 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Sox3P53784 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Sox3P53784 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.54■■□□□ 1.04
Sox3P53784 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
Sox3P53784 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Sox3P53784 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Sox3P53784 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Sox3P53784 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Sox3P53784 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Sox3P53784 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Sox3P53784 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Sox3P53784 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.52■■□□□ 1.04
Sox3P53784 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Sox3P53784 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.52■■□□□ 1.04
Sox3P53784 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Sox3P53784 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Sox3P53784 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Sox3P53784 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Sox3P53784 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Sox3P53784 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Sox3P53784 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Sox3P53784 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Sox3P53784 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.49■■□□□ 1.03
Sox3P53784 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Sox3P53784 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Sox3P53784 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.49■■□□□ 1.03
Sox3P53784 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Sox3P53784 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Sox3P53784 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Sox3P53784 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Sox3P53784 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Sox3P53784 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Sox3P53784 Gm10420-201ENSMUST00000121713 882 ntBASIC21.48■■□□□ 1.03
Sox3P53784 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Sox3P53784 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Sox3P53784 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.48■■□□□ 1.03
Sox3P53784 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Sox3P53784 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
Sox3P53784 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.47■■□□□ 1.03
Sox3P53784 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.47■■□□□ 1.03
Sox3P53784 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Sox3P53784 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC21.46■■□□□ 1.03
Sox3P53784 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Sox3P53784 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Sox3P53784 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Sox3P53784 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Sox3P53784 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Sox3P53784 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Sox3P53784 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.44■■□□□ 1.02
Sox3P53784 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.44■■□□□ 1.02
Sox3P53784 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Sox3P53784 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.44■■□□□ 1.02
Sox3P53784 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Sox3P53784 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Sox3P53784 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Sox3P53784 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Sox3P53784 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Sox3P53784 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sox3P53784 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Sox3P53784 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Sox3P53784 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.42■■□□□ 1.02
Sox3P53784 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.42■■□□□ 1.02
Sox3P53784 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Sox3P53784 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Sox3P53784 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Sox3P53784 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.41■■□□□ 1.02
Sox3P53784 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.41■■□□□ 1.02
Sox3P53784 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Sox3P53784 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.41■■□□□ 1.02
Sox3P53784 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Sox3P53784 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.4■■□□□ 1.02
Sox3P53784 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Sox3P53784 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sox3P53784 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Sox3P53784 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Sox3P53784 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Sox3P53784 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms