Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm25239-201ENSMUST00000174915 86 ntBASIC36.55■■■■□ 3.44
Sox3P53784 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
Sox3P53784 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Sox3P53784 Gm24109-201ENSMUST00000175489 103 ntBASIC31.99■■■□□ 2.71
Sox3P53784 Gm15042-201ENSMUST00000120212 883 ntBASIC31.32■■■□□ 2.6
Sox3P53784 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
Sox3P53784 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Sox3P53784 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
Sox3P53784 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Sox3P53784 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
Sox3P53784 Gm15045-201ENSMUST00000117359 883 ntBASIC30.53■■■□□ 2.48
Sox3P53784 Gm23366-201ENSMUST00000175022 89 ntBASIC30.45■■■□□ 2.47
Sox3P53784 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.1■■■□□ 2.41
Sox3P53784 AC153911.1-202ENSMUST00000218534 1034 ntBASIC30.06■■■□□ 2.4
Sox3P53784 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Sox3P53784 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Sox3P53784 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC29.81■■■□□ 2.36
Sox3P53784 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Sox3P53784 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC29.69■■■□□ 2.34
Sox3P53784 Psd-208ENSMUST00000224556 2034 ntBASIC29.39■■■□□ 2.3
Sox3P53784 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Sox3P53784 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
Sox3P53784 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Sox3P53784 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC29.13■■■□□ 2.25
Sox3P53784 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
Sox3P53784 Gm25238-201ENSMUST00000174914 89 ntBASIC29.07■■■□□ 2.24
Sox3P53784 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Sox3P53784 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
Sox3P53784 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Sox3P53784 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC28.5■■■□□ 2.15
Sox3P53784 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
Sox3P53784 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
Sox3P53784 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Sox3P53784 Gm25262-201ENSMUST00000174934 133 ntBASIC28.16■■■□□ 2.1
Sox3P53784 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC28.08■■■□□ 2.09
Sox3P53784 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
Sox3P53784 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
Sox3P53784 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
Sox3P53784 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC27.93■■■□□ 2.06
Sox3P53784 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Sox3P53784 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC27.85■■■□□ 2.05
Sox3P53784 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Sox3P53784 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC27.8■■■□□ 2.04
Sox3P53784 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Sox3P53784 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Sox3P53784 Gm26115-201ENSMUST00000175605 87 ntBASIC27.73■■■□□ 2.03
Sox3P53784 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC27.73■■■□□ 2.03
Sox3P53784 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Sox3P53784 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC27.66■■■□□ 2.02
Sox3P53784 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Sox3P53784 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
Sox3P53784 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Sox3P53784 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Sox3P53784 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC27.52■■■□□ 2
Sox3P53784 Gm8109-201ENSMUST00000194076 746 ntBASIC27.47■■□□□ 1.99
Sox3P53784 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.47■■□□□ 1.99
Sox3P53784 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Sox3P53784 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
Sox3P53784 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Sox3P53784 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.35■■□□□ 1.97
Sox3P53784 Gm27325-201ENSMUST00000175467 74 ntBASIC27.34■■□□□ 1.97
Sox3P53784 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Sox3P53784 Rab21-202ENSMUST00000218831 843 ntBASIC27.27■■□□□ 1.96
Sox3P53784 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC27.27■■□□□ 1.96
Sox3P53784 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
Sox3P53784 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Sox3P53784 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
Sox3P53784 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.14■■□□□ 1.93
Sox3P53784 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
Sox3P53784 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Sox3P53784 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.92■■□□□ 1.9
Sox3P53784 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC26.91■■□□□ 1.9
Sox3P53784 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Sox3P53784 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Sox3P53784 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
Sox3P53784 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC26.87■■□□□ 1.89
Sox3P53784 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Sox3P53784 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
Sox3P53784 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Sox3P53784 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.71■■□□□ 1.87
Sox3P53784 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Sox3P53784 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Sox3P53784 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Sox3P53784 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Sox3P53784 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Sox3P53784 Gm24804-201ENSMUST00000174982 85 ntBASIC26.55■■□□□ 1.84
Sox3P53784 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Sox3P53784 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.53■■□□□ 1.84
Sox3P53784 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Sox3P53784 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.49■■□□□ 1.83
Sox3P53784 Gm17082-201ENSMUST00000166043 1091 ntBASIC26.48■■□□□ 1.83
Sox3P53784 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC26.48■■□□□ 1.83
Sox3P53784 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.37■■□□□ 1.81
Sox3P53784 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Sox3P53784 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Sox3P53784 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Sox3P53784 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.34■■□□□ 1.81
Sox3P53784 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Sox3P53784 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC26.3■■□□□ 1.8
Sox3P53784 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms