Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chmp6P0C0A3 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC24.53■■□□□ 1.52
Chmp6P0C0A3 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Chmp6P0C0A3 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Chmp6P0C0A3 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp6P0C0A3 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Chmp6P0C0A3 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Chmp6P0C0A3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Gm45364-201ENSMUST00000210883 159 ntBASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Chmp6P0C0A3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp6P0C0A3 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp6P0C0A3 Pkd1-207ENSMUST00000228550 1050 ntBASIC24.49■■□□□ 1.51
Chmp6P0C0A3 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp6P0C0A3 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp6P0C0A3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp6P0C0A3 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
Chmp6P0C0A3 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC24.48■■□□□ 1.51
Chmp6P0C0A3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp6P0C0A3 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp6P0C0A3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp6P0C0A3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp6P0C0A3 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.46■■□□□ 1.51
Chmp6P0C0A3 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp6P0C0A3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Chmp6P0C0A3 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp6P0C0A3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC24.45■■□□□ 1.5
Chmp6P0C0A3 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp6P0C0A3 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp6P0C0A3 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp6P0C0A3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp6P0C0A3 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
Chmp6P0C0A3 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp6P0C0A3 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.42■■□□□ 1.5
Chmp6P0C0A3 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp6P0C0A3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
Chmp6P0C0A3 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.41■■□□□ 1.5
Chmp6P0C0A3 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp6P0C0A3 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp6P0C0A3 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
Chmp6P0C0A3 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Chmp6P0C0A3 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
Chmp6P0C0A3 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Chmp6P0C0A3 Scarna2-201ENSMUST00000157560 414 ntBASIC24.38■■□□□ 1.49
Chmp6P0C0A3 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Chmp6P0C0A3 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Chmp6P0C0A3 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Gm4419-202ENSMUST00000226239 1431 ntBASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Chmp6P0C0A3 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Chmp6P0C0A3 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC24.36■■□□□ 1.49
Chmp6P0C0A3 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Chmp6P0C0A3 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Gm9812-201ENSMUST00000061934 968 ntBASIC24.35■■□□□ 1.49
Chmp6P0C0A3 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Chmp6P0C0A3 Gm11175-201ENSMUST00000116172 543 ntBASIC24.33■■□□□ 1.49
Chmp6P0C0A3 AC122317.2-201ENSMUST00000218708 1248 ntBASIC24.33■■□□□ 1.49
Chmp6P0C0A3 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Chmp6P0C0A3 Gm16437-201ENSMUST00000025669 507 ntBASIC24.32■■□□□ 1.48
Chmp6P0C0A3 Gm9806-201ENSMUST00000051080 552 ntBASIC24.32■■□□□ 1.48
Chmp6P0C0A3 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chmp6P0C0A3 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chmp6P0C0A3 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
Chmp6P0C0A3 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
Chmp6P0C0A3 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC24.3■■□□□ 1.48
Chmp6P0C0A3 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
Chmp6P0C0A3 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 85.3 ms