Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 AC116562.4-202ENST00000641738 218 ntBASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 ESPNP-201ENST00000270691 2015 ntBASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VPS29Q9UBQ0 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AL355075.4-201ENST00000554988 638 ntBASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 KRT8P7-201ENST00000533003 1432 ntBASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 HOXB1-202ENST00000577092 1414 ntBASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS29Q9UBQ0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 WWOX-216ENST00000569818 525 ntBASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 MIR4497-201ENST00000583208 89 ntBASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 CR769767.2-201ENST00000622735 460 ntBASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS29Q9UBQ0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 AC007663.1-201ENST00000438948 1240 ntBASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
VPS29Q9UBQ0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms