Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 HLA-F-220ENST00000434407 884 ntBASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 MIR3180-1-201ENST00000580374 94 ntBASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 MIR3180-3-201ENST00000584616 94 ntBASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 AL121672.3-201ENST00000608644 468 ntBASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
RPAP1Q9BWH6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 TSSC2-201ENST00000450217 709 ntBASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 PRR29-207ENST00000580752 458 ntTSL 3 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.37■■□□□ 1.17
RPAP1Q9BWH6 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 KRT8P7-201ENST00000533003 1432 ntBASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 AC005082.1-201ENST00000413042 2259 ntBASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 MIR564-202ENST00000385049 94 ntBASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 AC011498.5-201ENST00000592027 486 ntBASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 VPS72-207ENST00000640458 689 ntTSL 5 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 AC008556.1-201ENST00000610908 2040 ntBASIC22.36■■□□□ 1.17
RPAP1Q9BWH6 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 EML3-217ENST00000531557 2509 ntTSL 5 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 AC079602.3-201ENST00000623931 403 ntBASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
RPAP1Q9BWH6 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 HOXB1-202ENST00000577092 1414 ntBASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RPAP1Q9BWH6 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms