Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 HEIH-201ENST00000623091 1652 ntBASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 TSPY22P-201ENST00000427496 604 ntBASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 RNF126P1-202ENST00000569893 925 ntBASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAIPQ9BWF2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 AC138932.1-201ENST00000534164 6830 ntBASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAIPQ9BWF2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 AC009065.1-201ENST00000564055 1225 ntBASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 Z98044.1-201ENST00000632503 1764 ntBASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAIPQ9BWF2 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRAIPQ9BWF2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRAIPQ9BWF2 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
TRAIPQ9BWF2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
TRAIPQ9BWF2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.82
TRAIPQ9BWF2 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms