Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC24.03■■□□□ 1.44
RTF1Q92541 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC24.03■■□□□ 1.44
RTF1Q92541 DUSP5P1-201ENST00000441325 1139 ntBASIC24.03■■□□□ 1.44
RTF1Q92541 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.03■■□□□ 1.44
RTF1Q92541 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC24.03■■□□□ 1.44
RTF1Q92541 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC24.03■■□□□ 1.44
RTF1Q92541 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC24.03■■□□□ 1.44
RTF1Q92541 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC24.03■■□□□ 1.44
RTF1Q92541 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 UROS-202ENST00000368778 1556 ntTSL 2 BASIC24.03■■□□□ 1.44
RTF1Q92541 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC24.03■■□□□ 1.44
RTF1Q92541 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
RTF1Q92541 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
RTF1Q92541 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.02■■□□□ 1.44
RTF1Q92541 AC090616.6-201ENST00000582640 721 ntBASIC24.02■■□□□ 1.44
RTF1Q92541 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.02■■□□□ 1.44
RTF1Q92541 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.02■■□□□ 1.44
RTF1Q92541 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC24.02■■□□□ 1.44
RTF1Q92541 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
RTF1Q92541 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
RTF1Q92541 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC24.01■■□□□ 1.43
RTF1Q92541 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC24.01■■□□□ 1.43
RTF1Q92541 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC24.01■■□□□ 1.43
RTF1Q92541 MIR3652-201ENST00000579335 131 ntBASIC24.01■■□□□ 1.43
RTF1Q92541 IGHV3-41-201ENST00000613121 348 ntBASIC24.01■■□□□ 1.43
RTF1Q92541 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
RTF1Q92541 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC24.01■■□□□ 1.43
RTF1Q92541 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
RTF1Q92541 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 ASL-204ENST00000395331 1538 ntTSL 5 BASIC24■■□□□ 1.43
RTF1Q92541 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC24■■□□□ 1.43
RTF1Q92541 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
RTF1Q92541 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC24■■□□□ 1.43
RTF1Q92541 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC24■■□□□ 1.43
RTF1Q92541 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24■■□□□ 1.43
RTF1Q92541 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC24■■□□□ 1.43
RTF1Q92541 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
RTF1Q92541 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC24■■□□□ 1.43
RTF1Q92541 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
RTF1Q92541 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
RTF1Q92541 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC23.99■■□□□ 1.43
RTF1Q92541 ANO7L1-203ENST00000602586 1720 ntBASIC23.99■■□□□ 1.43
RTF1Q92541 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
RTF1Q92541 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
RTF1Q92541 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.99■■□□□ 1.43
RTF1Q92541 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.99■■□□□ 1.43
RTF1Q92541 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
RTF1Q92541 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.99■■□□□ 1.43
RTF1Q92541 AC012313.10-201ENST00000623509 926 ntBASIC23.99■■□□□ 1.43
RTF1Q92541 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.99■■□□□ 1.43
RTF1Q92541 SDHAP2-201ENST00000455183 2001 ntBASIC23.99■■□□□ 1.43
RTF1Q92541 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC23.99■■□□□ 1.43
RTF1Q92541 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
RTF1Q92541 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
RTF1Q92541 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
RTF1Q92541 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
RTF1Q92541 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC23.98■■□□□ 1.43
RTF1Q92541 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
RTF1Q92541 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms