Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC24.51■■□□□ 1.51
USP54Q70EL1 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 AC068472.1-201ENST00000474589 881 ntBASIC24.51■■□□□ 1.51
USP54Q70EL1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC24.51■■□□□ 1.51
USP54Q70EL1 AL049840.3-201ENST00000602669 611 ntBASIC24.51■■□□□ 1.51
USP54Q70EL1 AL591684.3-201ENST00000605187 298 ntBASIC24.51■■□□□ 1.51
USP54Q70EL1 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
USP54Q70EL1 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
USP54Q70EL1 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC24.51■■□□□ 1.51
USP54Q70EL1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC24.51■■□□□ 1.51
USP54Q70EL1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 AL590627.1-203ENST00000421194 1026 ntBASIC24.5■■□□□ 1.51
USP54Q70EL1 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 RPL18-209ENST00000550645 463 ntTSL 5 BASIC24.5■■□□□ 1.51
USP54Q70EL1 RPL18-214ENST00000552588 559 ntTSL 3 BASIC24.5■■□□□ 1.51
USP54Q70EL1 IRF8-202ENST00000562492 946 ntTSL 3 BASIC24.5■■□□□ 1.51
USP54Q70EL1 CYGB-205ENST00000590175 830 ntTSL 3 BASIC24.5■■□□□ 1.51
USP54Q70EL1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC24.5■■□□□ 1.51
USP54Q70EL1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC24.5■■□□□ 1.51
USP54Q70EL1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC24.5■■□□□ 1.51
USP54Q70EL1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC24.5■■□□□ 1.51
USP54Q70EL1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
USP54Q70EL1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 AC009533.2-201ENST00000543664 586 ntBASIC24.5■■□□□ 1.51
USP54Q70EL1 AC139887.3-201ENST00000568585 713 ntBASIC24.5■■□□□ 1.51
USP54Q70EL1 LITAF-211ENST00000572255 516 ntTSL 4 BASIC24.5■■□□□ 1.51
USP54Q70EL1 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC24.5■■□□□ 1.51
USP54Q70EL1 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC24.5■■□□□ 1.51
USP54Q70EL1 AC064862.7-201ENST00000604520 867 ntBASIC24.5■■□□□ 1.51
USP54Q70EL1 AL139288.1-201ENST00000623748 933 ntBASIC24.5■■□□□ 1.51
USP54Q70EL1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
USP54Q70EL1 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.49■■□□□ 1.51
USP54Q70EL1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC24.49■■□□□ 1.51
USP54Q70EL1 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 PAN3-AS1-201ENST00000563843 1351 ntBASIC24.49■■□□□ 1.51
USP54Q70EL1 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.49■■□□□ 1.51
USP54Q70EL1 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USP54Q70EL1 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
USP54Q70EL1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 MTCL1P1-201ENST00000446207 792 ntBASIC24.49■■□□□ 1.51
USP54Q70EL1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC24.49■■□□□ 1.51
USP54Q70EL1 AC073648.2-201ENST00000510116 352 ntBASIC24.49■■□□□ 1.51
USP54Q70EL1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC24.49■■□□□ 1.51
USP54Q70EL1 MIR5100-201ENST00000579544 119 ntBASIC24.49■■□□□ 1.51
USP54Q70EL1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC24.49■■□□□ 1.51
USP54Q70EL1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
USP54Q70EL1 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 AFG3L1P-217ENST00000557444 2447 ntBASIC24.48■■□□□ 1.51
USP54Q70EL1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
USP54Q70EL1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
USP54Q70EL1 RCN1P2-201ENST00000398357 915 ntBASIC24.48■■□□□ 1.51
USP54Q70EL1 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
USP54Q70EL1 HNRNPDP1-201ENST00000439535 754 ntBASIC24.48■■□□□ 1.51
USP54Q70EL1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
USP54Q70EL1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC24.48■■□□□ 1.51
USP54Q70EL1 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC24.48■■□□□ 1.51
USP54Q70EL1 AC079776.4-201ENST00000511039 504 ntBASIC24.48■■□□□ 1.51
USP54Q70EL1 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
USP54Q70EL1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.48■■□□□ 1.51
USP54Q70EL1 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
USP54Q70EL1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC24.47■■□□□ 1.51
USP54Q70EL1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 AC006538.3-201ENST00000612495 578 ntBASIC24.47■■□□□ 1.51
USP54Q70EL1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC24.47■■□□□ 1.51
USP54Q70EL1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
USP54Q70EL1 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC24.46■■□□□ 1.51
USP54Q70EL1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms