Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.67■□□□□ 0.58
RPA3P35244 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.67■□□□□ 0.58
RPA3P35244 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
RPA3P35244 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
RPA3P35244 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
RPA3P35244 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.66■□□□□ 0.58
RPA3P35244 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
RPA3P35244 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.66■□□□□ 0.58
RPA3P35244 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.66■□□□□ 0.58
RPA3P35244 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.66■□□□□ 0.58
RPA3P35244 FAM197Y1-201ENST00000421178 764 ntBASIC18.66■□□□□ 0.58
RPA3P35244 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.66■□□□□ 0.58
RPA3P35244 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.66■□□□□ 0.58
RPA3P35244 CD177P1-201ENST00000606252 935 ntBASIC18.66■□□□□ 0.58
RPA3P35244 AL049637.2-201ENST00000641778 930 ntBASIC18.66■□□□□ 0.58
RPA3P35244 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RPA3P35244 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RPA3P35244 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.65■□□□□ 0.58
RPA3P35244 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
RPA3P35244 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.65■□□□□ 0.58
RPA3P35244 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RPA3P35244 AC090340.1-201ENST00000620778 4980 ntBASIC18.65■□□□□ 0.58
RPA3P35244 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.65■□□□□ 0.58
RPA3P35244 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.65■□□□□ 0.58
RPA3P35244 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RPA3P35244 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RPA3P35244 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.65■□□□□ 0.58
RPA3P35244 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
RPA3P35244 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RPA3P35244 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
RPA3P35244 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RPA3P35244 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
RPA3P35244 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RPA3P35244 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
RPA3P35244 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RPA3P35244 KRT8P41-201ENST00000533985 1514 ntBASIC18.64■□□□□ 0.58
RPA3P35244 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RPA3P35244 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
RPA3P35244 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.64■□□□□ 0.57
RPA3P35244 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.64■□□□□ 0.57
RPA3P35244 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.64■□□□□ 0.57
RPA3P35244 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.64■□□□□ 0.57
RPA3P35244 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.64■□□□□ 0.57
RPA3P35244 AC113410.3-201ENST00000623366 203 ntBASIC18.64■□□□□ 0.57
RPA3P35244 AL031985.4-201ENST00000642138 673 ntBASIC18.64■□□□□ 0.57
RPA3P35244 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.64■□□□□ 0.57
RPA3P35244 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RPA3P35244 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPA3P35244 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RPA3P35244 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms