Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.53■□□□□ 0.56
PTPN4P29074 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
PTPN4P29074 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PTPN4P29074 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
PTPN4P29074 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.52■□□□□ 0.56
PTPN4P29074 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.52■□□□□ 0.56
PTPN4P29074 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PTPN4P29074 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 AC116351.2-201ENST00000606540 1585 ntBASIC18.52■□□□□ 0.56
PTPN4P29074 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.52■□□□□ 0.56
PTPN4P29074 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 AC134043.2-201ENST00000624206 2238 ntBASIC18.52■□□□□ 0.56
PTPN4P29074 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.52■□□□□ 0.56
PTPN4P29074 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.52■□□□□ 0.56
PTPN4P29074 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.52■□□□□ 0.56
PTPN4P29074 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.52■□□□□ 0.56
PTPN4P29074 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PTPN4P29074 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.52■□□□□ 0.55
PTPN4P29074 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN4P29074 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN4P29074 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
PTPN4P29074 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.55
PTPN4P29074 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
PTPN4P29074 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PTPN4P29074 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
PTPN4P29074 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
PTPN4P29074 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 TMPOP1-202ENST00000424642 1267 ntBASIC18.51■□□□□ 0.55
PTPN4P29074 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PTPN4P29074 C1QL1P1-201ENST00000568105 661 ntBASIC18.51■□□□□ 0.55
PTPN4P29074 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN4P29074 AC083906.6-201ENST00000641366 219 ntBASIC18.51■□□□□ 0.55
PTPN4P29074 AL031985.4-201ENST00000642138 673 ntBASIC18.51■□□□□ 0.55
PTPN4P29074 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.51■□□□□ 0.55
PTPN4P29074 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN4P29074 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PTPN4P29074 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN4P29074 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.51■□□□□ 0.55
PTPN4P29074 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.51■□□□□ 0.55
PTPN4P29074 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PTPN4P29074 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
PTPN4P29074 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PTPN4P29074 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.5■□□□□ 0.55
PTPN4P29074 KRT8P9-201ENST00000558927 1449 ntBASIC18.5■□□□□ 0.55
PTPN4P29074 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
PTPN4P29074 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.5■□□□□ 0.55
PTPN4P29074 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.5■□□□□ 0.55
PTPN4P29074 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.5■□□□□ 0.55
PTPN4P29074 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.5■□□□□ 0.55
PTPN4P29074 AC005363.2-201ENST00000618631 242 ntBASIC18.5■□□□□ 0.55
PTPN4P29074 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PTPN4P29074 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PTPN4P29074 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.5■□□□□ 0.55
PTPN4P29074 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PTPN4P29074 TFP1-202ENST00000475455 1573 ntBASIC18.5■□□□□ 0.55
PTPN4P29074 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms