Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.66■□□□□ 0.42
COL5A1P20908 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 MIR5100-201ENST00000579544 119 ntBASIC17.66■□□□□ 0.42
COL5A1P20908 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
COL5A1P20908 AC112777.1-201ENST00000540175 1423 ntBASIC17.66■□□□□ 0.42
COL5A1P20908 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL5A1P20908 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
COL5A1P20908 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.66■□□□□ 0.42
COL5A1P20908 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
COL5A1P20908 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 BX842568.4-201ENST00000421222 227 ntBASIC17.65■□□□□ 0.42
COL5A1P20908 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.65■□□□□ 0.42
COL5A1P20908 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A1P20908 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
COL5A1P20908 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A1P20908 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
COL5A1P20908 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 RPL13AP23-201ENST00000480739 586 ntBASIC17.65■□□□□ 0.42
COL5A1P20908 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A1P20908 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A1P20908 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.65■□□□□ 0.42
COL5A1P20908 AC008687.5-201ENST00000593746 558 ntBASIC17.65■□□□□ 0.42
COL5A1P20908 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.65■□□□□ 0.42
COL5A1P20908 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A1P20908 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.65■□□□□ 0.42
COL5A1P20908 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL5A1P20908 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.64■□□□□ 0.41
COL5A1P20908 AL049840.3-201ENST00000602669 611 ntBASIC17.64■□□□□ 0.41
COL5A1P20908 PMS2P7-201ENST00000506558 1336 ntBASIC17.64■□□□□ 0.41
COL5A1P20908 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL5A1P20908 AL163051.1-201ENST00000569214 1512 ntBASIC17.64■□□□□ 0.41
COL5A1P20908 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL5A1P20908 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL5A1P20908 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL5A1P20908 AL161938.1-201ENST00000569833 2180 ntBASIC17.63■□□□□ 0.41
COL5A1P20908 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL5A1P20908 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL5A1P20908 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A1P20908 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL5A1P20908 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A1P20908 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A1P20908 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.63■□□□□ 0.41
COL5A1P20908 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.63■□□□□ 0.41
COL5A1P20908 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL5A1P20908 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A1P20908 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 HNRNPDP1-201ENST00000439535 754 ntBASIC17.63■□□□□ 0.41
COL5A1P20908 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.63■□□□□ 0.41
COL5A1P20908 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.63■□□□□ 0.41
COL5A1P20908 AP001269.4-201ENST00000609611 512 ntBASIC17.63■□□□□ 0.41
COL5A1P20908 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL5A1P20908 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL5A1P20908 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A1P20908 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.62■□□□□ 0.41
COL5A1P20908 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL5A1P20908 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL5A1P20908 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.62■□□□□ 0.41
COL5A1P20908 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
COL5A1P20908 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms