Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.02■□□□□ 0.63
VCANP13611 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
VCANP13611 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
VCANP13611 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
VCANP13611 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
VCANP13611 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.02■□□□□ 0.63
VCANP13611 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 ARSEP1-201ENST00000420443 635 ntBASIC19.01■□□□□ 0.63
VCANP13611 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC19.01■□□□□ 0.63
VCANP13611 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
VCANP13611 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
VCANP13611 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.01■□□□□ 0.63
VCANP13611 TERF1P3-201ENST00000505638 1227 ntBASIC19.01■□□□□ 0.63
VCANP13611 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.01■□□□□ 0.63
VCANP13611 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC19.01■□□□□ 0.63
VCANP13611 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
VCANP13611 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.01■□□□□ 0.63
VCANP13611 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 AC093214.1-201ENST00000511688 1107 ntBASIC19.01■□□□□ 0.63
VCANP13611 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VCANP13611 AL109659.2-201ENST00000606809 1674 ntBASIC19.01■□□□□ 0.63
VCANP13611 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19■□□□□ 0.63
VCANP13611 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19■□□□□ 0.63
VCANP13611 AC015911.4-201ENST00000588022 1070 ntBASIC19■□□□□ 0.63
VCANP13611 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19■□□□□ 0.63
VCANP13611 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19■□□□□ 0.63
VCANP13611 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
VCANP13611 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19■□□□□ 0.63
VCANP13611 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19■□□□□ 0.63
VCANP13611 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19■□□□□ 0.63
VCANP13611 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
VCANP13611 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VCANP13611 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 EFS-203ENST00000429593 2610 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.99■□□□□ 0.63
VCANP13611 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VCANP13611 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.99■□□□□ 0.63
VCANP13611 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.99■□□□□ 0.63
VCANP13611 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.99■□□□□ 0.63
VCANP13611 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.99■□□□□ 0.63
VCANP13611 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VCANP13611 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VCANP13611 AL132655.2-201ENST00000596276 594 ntBASIC18.98■□□□□ 0.63
VCANP13611 AC024563.2-201ENST00000603282 481 ntBASIC18.98■□□□□ 0.63
VCANP13611 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
VCANP13611 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.98■□□□□ 0.63
VCANP13611 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.98■□□□□ 0.63
VCANP13611 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.98■□□□□ 0.63
VCANP13611 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.98■□□□□ 0.63
VCANP13611 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
VCANP13611 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VCANP13611 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.98■□□□□ 0.63
VCANP13611 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.98■□□□□ 0.63
VCANP13611 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.98■□□□□ 0.63
VCANP13611 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 SLC25A6P5-201ENST00000435663 894 ntBASIC18.97■□□□□ 0.63
VCANP13611 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.97■□□□□ 0.63
VCANP13611 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.97■□□□□ 0.63
VCANP13611 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.97■□□□□ 0.63
VCANP13611 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VCANP13611 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VCANP13611 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms