Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.47■■□□□ 1.03
PRPF40AO75400 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.47■■□□□ 1.03
PRPF40AO75400 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 AC012317.2-201ENST00000623305 2251 ntBASIC21.47■■□□□ 1.03
PRPF40AO75400 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.47■■□□□ 1.03
PRPF40AO75400 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.47■■□□□ 1.03
PRPF40AO75400 C1QL1P1-201ENST00000568105 661 ntBASIC21.47■■□□□ 1.03
PRPF40AO75400 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 AL645608.8-201ENST00000606034 2086 ntBASIC21.47■■□□□ 1.03
PRPF40AO75400 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.47■■□□□ 1.03
PRPF40AO75400 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PRPF40AO75400 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.47■■□□□ 1.03
PRPF40AO75400 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PRPF40AO75400 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC21.47■■□□□ 1.03
PRPF40AO75400 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
PRPF40AO75400 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
PRPF40AO75400 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
PRPF40AO75400 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.46■■□□□ 1.03
PRPF40AO75400 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.46■■□□□ 1.03
PRPF40AO75400 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.46■■□□□ 1.03
PRPF40AO75400 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 AC066615.1-201ENST00000640911 628 ntBASIC21.46■■□□□ 1.03
PRPF40AO75400 AC073648.6-201ENST00000641589 218 ntBASIC21.46■■□□□ 1.03
PRPF40AO75400 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.46■■□□□ 1.03
PRPF40AO75400 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.46■■□□□ 1.03
PRPF40AO75400 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PRPF40AO75400 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.45■■□□□ 1.03
PRPF40AO75400 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.45■■□□□ 1.03
PRPF40AO75400 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
PRPF40AO75400 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PRPF40AO75400 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PRPF40AO75400 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.45■■□□□ 1.02
PRPF40AO75400 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.45■■□□□ 1.02
PRPF40AO75400 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF40AO75400 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF40AO75400 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
PRPF40AO75400 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PRPF40AO75400 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.45■■□□□ 1.02
PRPF40AO75400 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
PRPF40AO75400 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PRPF40AO75400 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC21.44■■□□□ 1.02
PRPF40AO75400 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.44■■□□□ 1.02
PRPF40AO75400 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.44■■□□□ 1.02
PRPF40AO75400 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
PRPF40AO75400 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.44■■□□□ 1.02
PRPF40AO75400 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.44■■□□□ 1.02
PRPF40AO75400 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.44■■□□□ 1.02
PRPF40AO75400 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
PRPF40AO75400 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.44■■□□□ 1.02
PRPF40AO75400 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PRPF40AO75400 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.44■■□□□ 1.02
PRPF40AO75400 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PRPF40AO75400 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms