Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TSEN15P1-201ENST00000423257 515 ntBASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 AC009947.1-201ENST00000444350 727 ntBASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 AC006333.2-201ENST00000607957 2099 ntBASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 LAGE3P1-201ENST00000425356 484 ntBASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A6A6NMZ7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 AC120498.9-201ENST00000339021 3867 ntBASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 AC107918.4-202ENST00000641623 219 ntBASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A6A6NMZ7 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A6A6NMZ7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms