Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 AC005521.1-201ENST00000393351 872 ntBASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 AC104390.1-201ENST00000555663 520 ntBASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 NEK4P2-201ENST00000580004 1012 ntBASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 AC024243.1-201ENST00000609234 778 ntBASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.48■□□□□ 0.39
ATG4BQ9Y4P1 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 AL163051.1-201ENST00000569214 1512 ntBASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 TERF1P1-201ENST00000311003 1181 ntBASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 LIN28AP1-201ENST00000429574 405 ntBASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.47■□□□□ 0.39
ATG4BQ9Y4P1 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AL137013.1-201ENST00000432946 1228 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 ATP5G1P1-201ENST00000448724 379 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 SEC1P-202ENST00000473944 940 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 RN7SL850P-201ENST00000579959 291 ntBASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4BQ9Y4P1 AC092865.7-201ENST00000641832 219 ntBASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms