Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 MFAP1P1-201ENST00000442257 1255 ntBASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMA1Q9UHB6 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 LTB4R2-202ENST00000528054 3092 ntBASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 CA15P1-201ENST00000481698 905 ntBASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 SLC25A1P4-201ENST00000567977 778 ntBASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIMA1Q9UHB6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 SDHAP2-201ENST00000455183 2001 ntBASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 AL135905.2-201ENST00000584934 1404 ntBASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
LIMA1Q9UHB6 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 NUDT16P1-203ENST00000513809 620 ntBASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 MIR4674-201ENST00000582457 87 ntBASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 MIR3180-5-201ENST00000583743 153 ntBASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 FAM197Y4-202ENST00000622692 608 ntBASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.17■□□□□ 0.82
LIMA1Q9UHB6 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms