Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 AL022342.1-201ENST00000400363 863 ntBASIC16.21■□□□□ 0.19
LIME1Q9H400 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.21■□□□□ 0.19
LIME1Q9H400 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.21■□□□□ 0.19
LIME1Q9H400 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 AC006538.3-201ENST00000612495 578 ntBASIC16.21■□□□□ 0.19
LIME1Q9H400 AC004263.2-201ENST00000617183 678 ntBASIC16.21■□□□□ 0.19
LIME1Q9H400 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIME1Q9H400 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIME1Q9H400 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIME1Q9H400 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIME1Q9H400 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.21■□□□□ 0.18
LIME1Q9H400 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
LIME1Q9H400 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 AC005082.1-201ENST00000413042 2259 ntBASIC16.2■□□□□ 0.18
LIME1Q9H400 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
LIME1Q9H400 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 AC079781.3-201ENST00000449110 356 ntBASIC16.2■□□□□ 0.18
LIME1Q9H400 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.2■□□□□ 0.18
LIME1Q9H400 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIME1Q9H400 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.2■□□□□ 0.18
LIME1Q9H400 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIME1Q9H400 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.19■□□□□ 0.18
LIME1Q9H400 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LIME1Q9H400 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.19■□□□□ 0.18
LIME1Q9H400 AC034232.1-201ENST00000506026 1064 ntBASIC16.19■□□□□ 0.18
LIME1Q9H400 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.19■□□□□ 0.18
LIME1Q9H400 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LIME1Q9H400 AC104692.2-201ENST00000603054 253 ntBASIC16.19■□□□□ 0.18
LIME1Q9H400 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.19■□□□□ 0.18
LIME1Q9H400 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIME1Q9H400 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIME1Q9H400 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIME1Q9H400 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
LIME1Q9H400 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
LIME1Q9H400 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIME1Q9H400 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
LIME1Q9H400 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIME1Q9H400 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms