Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.1■□□□□ 0.17
COL12A1Q99715 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.1■□□□□ 0.17
COL12A1Q99715 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
COL12A1Q99715 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 MIR3180-4-201ENST00000582223 153 ntBASIC16.09■□□□□ 0.17
COL12A1Q99715 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.09■□□□□ 0.17
COL12A1Q99715 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.09■□□□□ 0.17
COL12A1Q99715 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.09■□□□□ 0.17
COL12A1Q99715 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.09■□□□□ 0.17
COL12A1Q99715 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 AC104390.1-201ENST00000555663 520 ntBASIC16.09■□□□□ 0.17
COL12A1Q99715 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 AC024563.2-201ENST00000603282 481 ntBASIC16.09■□□□□ 0.17
COL12A1Q99715 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
COL12A1Q99715 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.09■□□□□ 0.17
COL12A1Q99715 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL12A1Q99715 ZNF815P-204ENST00000434898 1737 ntBASIC16.09■□□□□ 0.17
COL12A1Q99715 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL12A1Q99715 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.09■□□□□ 0.17
COL12A1Q99715 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.17
COL12A1Q99715 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL12A1Q99715 AC002472.2-201ENST00000442739 958 ntBASIC16.08■□□□□ 0.17
COL12A1Q99715 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.08■□□□□ 0.17
COL12A1Q99715 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.08■□□□□ 0.17
COL12A1Q99715 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.08■□□□□ 0.17
COL12A1Q99715 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
COL12A1Q99715 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.08■□□□□ 0.17
COL12A1Q99715 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL12A1Q99715 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.08■□□□□ 0.16
COL12A1Q99715 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL12A1Q99715 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.08■□□□□ 0.16
COL12A1Q99715 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
COL12A1Q99715 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL12A1Q99715 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
COL12A1Q99715 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
COL12A1Q99715 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COL12A1Q99715 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL12A1Q99715 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
COL12A1Q99715 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COL12A1Q99715 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.08■□□□□ 0.16
COL12A1Q99715 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.08■□□□□ 0.16
COL12A1Q99715 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC16.08■□□□□ 0.16
COL12A1Q99715 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.08■□□□□ 0.16
COL12A1Q99715 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.08■□□□□ 0.16
COL12A1Q99715 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
COL12A1Q99715 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC16.07■□□□□ 0.16
COL12A1Q99715 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL12A1Q99715 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
COL12A1Q99715 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.07■□□□□ 0.16
COL12A1Q99715 AL031432.2-201ENST00000566714 459 ntBASIC16.07■□□□□ 0.16
COL12A1Q99715 AL928711.1-201ENST00000570165 459 ntBASIC16.07■□□□□ 0.16
COL12A1Q99715 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.07■□□□□ 0.16
COL12A1Q99715 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.07■□□□□ 0.16
COL12A1Q99715 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 INTS4P1-201ENST00000438455 1935 ntBASIC16.07■□□□□ 0.16
COL12A1Q99715 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.07■□□□□ 0.16
COL12A1Q99715 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.07■□□□□ 0.16
COL12A1Q99715 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 AL356309.3-201ENST00000624132 1934 ntBASIC16.07■□□□□ 0.16
COL12A1Q99715 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.07■□□□□ 0.16
COL12A1Q99715 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COL12A1Q99715 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.06■□□□□ 0.16
COL12A1Q99715 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
COL12A1Q99715 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
COL12A1Q99715 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.06■□□□□ 0.16
COL12A1Q99715 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.06■□□□□ 0.16
COL12A1Q99715 SIGLEC30P-201ENST00000455569 941 ntBASIC16.06■□□□□ 0.16
COL12A1Q99715 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms