Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AC093028.1-201ENST00000622998 982 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AL138831.2-201ENST00000606564 490 ntBASIC18.22■□□□□ 0.51
VPS13AQ96RL7 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS13AQ96RL7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 AC011467.4-201ENST00000594891 528 ntBASIC18.21■□□□□ 0.51
VPS13AQ96RL7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS13AQ96RL7 AC034236.2-201ENST00000606662 1610 ntBASIC18.21■□□□□ 0.5
VPS13AQ96RL7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.21■□□□□ 0.5
VPS13AQ96RL7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 AC005829.1-201ENST00000570002 483 ntBASIC18.2■□□□□ 0.5
VPS13AQ96RL7 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 LINC01006-201ENST00000333319 2292 ntBASIC18.2■□□□□ 0.5
VPS13AQ96RL7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 AC002310.6-201ENST00000624451 1377 ntBASIC18.2■□□□□ 0.5
VPS13AQ96RL7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS13AQ96RL7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC007274.1-201ENST00000439805 662 ntBASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC093512.1-201ENST00000617969 520 ntBASIC18.19■□□□□ 0.5
VPS13AQ96RL7 AC008735.5-201ENST00000623544 497 ntBASIC18.19■□□□□ 0.5
VPS13AQ96RL7 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS13AQ96RL7 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS13AQ96RL7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms