Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC125634.1-201ENST00000438758 1403 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC004817.3-201ENST00000602957 2129 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 AP002414.3-201ENST00000589352 1468 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC13.18□□□□□ -0.3
COL7A1Q02388 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC13.18□□□□□ -0.3
COL7A1Q02388 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL7A1Q02388 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC254562.1-201ENST00000417586 456 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC113404.2-201ENST00000507884 177 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC13.18□□□□□ -0.3
COL7A1Q02388 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.18□□□□□ -0.3
COL7A1Q02388 AC027612.4-201ENST00000605371 583 ntBASIC13.18□□□□□ -0.3
COL7A1Q02388 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL7A1Q02388 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 AC012676.1-201ENST00000574705 1949 ntBASIC13.17□□□□□ -0.3
COL7A1Q02388 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 MCCD1P2-201ENST00000423228 335 ntBASIC13.17□□□□□ -0.3
COL7A1Q02388 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC13.17□□□□□ -0.3
COL7A1Q02388 AC005829.1-201ENST00000570002 483 ntBASIC13.17□□□□□ -0.3
COL7A1Q02388 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.17□□□□□ -0.3
COL7A1Q02388 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
COL7A1Q02388 AC002310.6-201ENST00000624451 1377 ntBASIC13.17□□□□□ -0.3
COL7A1Q02388 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC13.17□□□□□ -0.3
COL7A1Q02388 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
COL7A1Q02388 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.17□□□□□ -0.3
COL7A1Q02388 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
COL7A1Q02388 MIR4469-201ENST00000583919 79 ntBASIC13.17□□□□□ -0.3
COL7A1Q02388 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.17□□□□□ -0.3
COL7A1Q02388 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL7A1Q02388 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 AL139400.1-201ENST00000366220 510 ntBASIC13.16□□□□□ -0.3
COL7A1Q02388 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.16□□□□□ -0.3
COL7A1Q02388 ABCD1P5-201ENST00000445663 754 ntBASIC13.16□□□□□ -0.3
COL7A1Q02388 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.16□□□□□ -0.3
COL7A1Q02388 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.16□□□□□ -0.3
COL7A1Q02388 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.16□□□□□ -0.3
COL7A1Q02388 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.16□□□□□ -0.3
COL7A1Q02388 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC13.16□□□□□ -0.3
COL7A1Q02388 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC13.16□□□□□ -0.3
COL7A1Q02388 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 MTDHP4-201ENST00000600287 670 ntBASIC13.16□□□□□ -0.3
COL7A1Q02388 AC125437.2-201ENST00000625180 2167 ntBASIC13.16□□□□□ -0.3
COL7A1Q02388 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC13.16□□□□□ -0.3
COL7A1Q02388 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL7A1Q02388 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
COL7A1Q02388 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL7A1Q02388 MIR770-201ENST00000390219 98 ntBASIC13.16□□□□□ -0.3
COL7A1Q02388 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC13.16□□□□□ -0.3
COL7A1Q02388 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms