Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC15.14■□□□□ 0.01
NKX2-1P43699 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC15.14■□□□□ 0.01
NKX2-1P43699 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 PHB2-213ENST00000546111 858 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC15.14■□□□□ 0.01
NKX2-1P43699 AC080038.1-201ENST00000611274 1154 ntBASIC15.14■□□□□ 0.01
NKX2-1P43699 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.14■□□□□ 0.01
NKX2-1P43699 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC15.14■□□□□ 0.01
NKX2-1P43699 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NKX2-1P43699 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NKX2-1P43699 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 KRT8P45-201ENST00000414328 1447 ntBASIC15.13■□□□□ 0.01
NKX2-1P43699 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.13■□□□□ 0.01
NKX2-1P43699 ABHD17AP6-201ENST00000458502 1044 ntBASIC15.13■□□□□ 0.01
NKX2-1P43699 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC15.13■□□□□ 0.01
NKX2-1P43699 AC099398.1-201ENST00000567919 2776 ntBASIC15.13■□□□□ 0.01
NKX2-1P43699 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 AC092437.1-201ENST00000624794 1048 ntBASIC15.13■□□□□ 0.01
NKX2-1P43699 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.13■□□□□ 0.01
NKX2-1P43699 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
NKX2-1P43699 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
NKX2-1P43699 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
NKX2-1P43699 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
NKX2-1P43699 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
NKX2-1P43699 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
NKX2-1P43699 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 FLJ13224-201ENST00000313737 1514 ntBASIC15.12■□□□□ 0.01
NKX2-1P43699 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 AC004911.1-201ENST00000416316 871 ntBASIC15.12■□□□□ 0.01
NKX2-1P43699 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 OR2A1-AS1-201ENST00000462305 773 ntBASIC15.12■□□□□ 0.01
NKX2-1P43699 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC15.12■□□□□ 0.01
NKX2-1P43699 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.12■□□□□ 0.01
NKX2-1P43699 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
NKX2-1P43699 IKBKGP1-201ENST00000612193 1073 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms