Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.64■□□□□ 0.41
MSX2P35548 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
MSX2P35548 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.64■□□□□ 0.41
MSX2P35548 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.64■□□□□ 0.41
MSX2P35548 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
MSX2P35548 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC17.64■□□□□ 0.41
MSX2P35548 AC120498.8-201ENST00000614275 531 ntBASIC17.64■□□□□ 0.41
MSX2P35548 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.64■□□□□ 0.41
MSX2P35548 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 AL121829.2-201ENST00000620908 328 ntBASIC17.64■□□□□ 0.41
MSX2P35548 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.64■□□□□ 0.41
MSX2P35548 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
MSX2P35548 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.64■□□□□ 0.41
MSX2P35548 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSX2P35548 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.64■□□□□ 0.41
MSX2P35548 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.64■□□□□ 0.41
MSX2P35548 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
MSX2P35548 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.63■□□□□ 0.41
MSX2P35548 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.63■□□□□ 0.41
MSX2P35548 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
MSX2P35548 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.63■□□□□ 0.41
MSX2P35548 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSX2P35548 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX2P35548 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX2P35548 PKD1P1-201ENST00000458669 6805 ntBASIC17.62■□□□□ 0.41
MSX2P35548 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX2P35548 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 AC091874.3-201ENST00000512672 1195 ntBASIC17.62■□□□□ 0.41
MSX2P35548 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.62■□□□□ 0.41
MSX2P35548 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
MSX2P35548 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX2P35548 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 AC099343.3-201ENST00000605834 2503 ntBASIC17.62■□□□□ 0.41
MSX2P35548 AC112777.1-201ENST00000540175 1423 ntBASIC17.62■□□□□ 0.41
MSX2P35548 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 KRT8P32-201ENST00000512863 1461 ntBASIC17.62■□□□□ 0.41
MSX2P35548 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.62■□□□□ 0.41
MSX2P35548 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
MSX2P35548 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSX2P35548 AD000864.1-201ENST00000624076 2295 ntBASIC17.61■□□□□ 0.41
MSX2P35548 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
MSX2P35548 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSX2P35548 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.61■□□□□ 0.41
MSX2P35548 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms