Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A3P12111 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A3P12111 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.2■□□□□ 0.66
COL6A3P12111 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL6A3P12111 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A3P12111 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A3P12111 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL6A3P12111 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
COL6A3P12111 HCG4B-203ENST00000450128 991 ntBASIC19.19■□□□□ 0.66
COL6A3P12111 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
COL6A3P12111 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 AC025678.2-201ENST00000562061 970 ntBASIC19.19■□□□□ 0.66
COL6A3P12111 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL6A3P12111 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL6A3P12111 FEM1AP4-201ENST00000443167 1987 ntBASIC19.18■□□□□ 0.66
COL6A3P12111 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.18■□□□□ 0.66
COL6A3P12111 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A3P12111 LINC01521-201ENST00000504184 1943 ntBASIC19.18■□□□□ 0.66
COL6A3P12111 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A3P12111 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL6A3P12111 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC19.18■□□□□ 0.66
COL6A3P12111 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL6A3P12111 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.18■□□□□ 0.66
COL6A3P12111 AC092720.2-201ENST00000602388 1665 ntBASIC19.18■□□□□ 0.66
COL6A3P12111 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL6A3P12111 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A3P12111 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC19.18■□□□□ 0.66
COL6A3P12111 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A3P12111 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A3P12111 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 AC004449.1-201ENST00000564240 433 ntBASIC19.17■□□□□ 0.66
COL6A3P12111 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A3P12111 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.17■□□□□ 0.66
COL6A3P12111 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.17■□□□□ 0.66
COL6A3P12111 NKAPP1-205ENST00000585790 367 ntBASIC19.17■□□□□ 0.66
COL6A3P12111 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.17■□□□□ 0.66
COL6A3P12111 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL6A3P12111 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.17■□□□□ 0.66
COL6A3P12111 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
COL6A3P12111 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A3P12111 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.16■□□□□ 0.66
COL6A3P12111 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 AC133561.1-201ENST00000568600 2415 ntBASIC19.16■□□□□ 0.66
COL6A3P12111 AC233723.2-201ENST00000623798 2106 ntBASIC19.16■□□□□ 0.66
COL6A3P12111 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A3P12111 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A3P12111 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.16■□□□□ 0.66
COL6A3P12111 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.16■□□□□ 0.66
COL6A3P12111 SPDYE22P-201ENST00000582158 798 ntBASIC19.16■□□□□ 0.66
COL6A3P12111 AC022145.2-201ENST00000598203 171 ntBASIC19.16■□□□□ 0.66
COL6A3P12111 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.16■□□□□ 0.66
COL6A3P12111 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL6A3P12111 RPS2P32-201ENST00000439199 892 ntBASIC19.16■□□□□ 0.66
COL6A3P12111 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms