Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.57■□□□□ 0.56
VIMP08670 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.57■□□□□ 0.56
VIMP08670 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.57■□□□□ 0.56
VIMP08670 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VIMP08670 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VIMP08670 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VIMP08670 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
VIMP08670 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VIMP08670 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 PP12613-201ENST00000424958 2230 ntBASIC18.56■□□□□ 0.56
VIMP08670 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 AC034268.1-201ENST00000441047 882 ntBASIC18.56■□□□□ 0.56
VIMP08670 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VIMP08670 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
VIMP08670 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.56■□□□□ 0.56
VIMP08670 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VIMP08670 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VIMP08670 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.55■□□□□ 0.56
VIMP08670 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 RCC2P6-201ENST00000526625 1557 ntBASIC18.55■□□□□ 0.56
VIMP08670 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
VIMP08670 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.55■□□□□ 0.56
VIMP08670 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
VIMP08670 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.55■□□□□ 0.56
VIMP08670 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
VIMP08670 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
VIMP08670 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VIMP08670 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
VIMP08670 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VIMP08670 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 FLJ13224-201ENST00000313737 1514 ntBASIC18.54■□□□□ 0.56
VIMP08670 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VIMP08670 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.54■□□□□ 0.56
VIMP08670 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms