Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HLA-DOAP06340 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
HLA-DOAP06340 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 AC026396.1-201ENST00000419388 421 ntBASIC21.75■■□□□ 1.07
HLA-DOAP06340 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 AC008687.5-201ENST00000593746 558 ntBASIC21.75■■□□□ 1.07
HLA-DOAP06340 Z69720.1-201ENST00000601483 472 ntBASIC21.75■■□□□ 1.07
HLA-DOAP06340 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 AC124864.1-201ENST00000623408 392 ntBASIC21.75■■□□□ 1.07
HLA-DOAP06340 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HLA-DOAP06340 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.75■■□□□ 1.07
HLA-DOAP06340 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
HLA-DOAP06340 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HLA-DOAP06340 MYLKP1-201ENST00000509077 1580 ntBASIC21.74■■□□□ 1.07
HLA-DOAP06340 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 RN7SL510P-201ENST00000581311 263 ntBASIC21.73■■□□□ 1.07
HLA-DOAP06340 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AL121772.3-201ENST00000610840 674 ntBASIC21.73■■□□□ 1.07
HLA-DOAP06340 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HLA-DOAP06340 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HLA-DOAP06340 AC233702.3-201ENST00000578656 1387 ntBASIC21.73■■□□□ 1.07
HLA-DOAP06340 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 AC004870.1-201ENST00000315132 882 ntBASIC21.72■■□□□ 1.07
HLA-DOAP06340 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 VENTXP7-201ENST00000475503 772 ntBASIC21.72■■□□□ 1.07
HLA-DOAP06340 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 AC074051.2-201ENST00000565115 352 ntBASIC21.72■■□□□ 1.07
HLA-DOAP06340 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms