Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC087499.1-201ENST00000418141 1075 ntBASIC21.48■■□□□ 1.03
CDKL5O76039 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.48■■□□□ 1.03
CDKL5O76039 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.48■■□□□ 1.03
CDKL5O76039 MIR3180-4-201ENST00000582223 153 ntBASIC21.48■■□□□ 1.03
CDKL5O76039 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.48■■□□□ 1.03
CDKL5O76039 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.48■■□□□ 1.03
CDKL5O76039 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.48■■□□□ 1.03
CDKL5O76039 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDKL5O76039 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CDKL5O76039 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDKL5O76039 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.48■■□□□ 1.03
CDKL5O76039 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CDKL5O76039 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDKL5O76039 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.48■■□□□ 1.03
CDKL5O76039 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDKL5O76039 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.47■■□□□ 1.03
CDKL5O76039 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 AL354751.1-201ENST00000412768 1863 ntBASIC21.47■■□□□ 1.03
CDKL5O76039 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CDKL5O76039 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.47■■□□□ 1.03
CDKL5O76039 AC009102.3-201ENST00000623118 1491 ntBASIC21.47■■□□□ 1.03
CDKL5O76039 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CDKL5O76039 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 AC104390.1-201ENST00000555663 520 ntBASIC21.47■■□□□ 1.03
CDKL5O76039 AC145285.6-201ENST00000604632 637 ntBASIC21.47■■□□□ 1.03
CDKL5O76039 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.47■■□□□ 1.03
CDKL5O76039 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CDKL5O76039 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CDKL5O76039 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDKL5O76039 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.46■■□□□ 1.03
CDKL5O76039 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.46■■□□□ 1.03
CDKL5O76039 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 AL390961.4-201ENST00000623958 2535 ntBASIC21.46■■□□□ 1.03
CDKL5O76039 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.46■■□□□ 1.03
CDKL5O76039 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.46■■□□□ 1.03
CDKL5O76039 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.46■■□□□ 1.03
CDKL5O76039 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.46■■□□□ 1.03
CDKL5O76039 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 NEK4P2-201ENST00000580004 1012 ntBASIC21.46■■□□□ 1.03
CDKL5O76039 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.46■■□□□ 1.03
CDKL5O76039 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 ABALON-201ENST00000629058 1903 ntBASIC21.46■■□□□ 1.03
CDKL5O76039 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.46■■□□□ 1.03
CDKL5O76039 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CDKL5O76039 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.45■■□□□ 1.03
CDKL5O76039 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
CDKL5O76039 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CDKL5O76039 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.45■■□□□ 1.02
CDKL5O76039 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.45■■□□□ 1.02
CDKL5O76039 AC009947.2-201ENST00000444014 672 ntBASIC21.45■■□□□ 1.02
CDKL5O76039 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.45■■□□□ 1.02
CDKL5O76039 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.45■■□□□ 1.02
CDKL5O76039 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CDKL5O76039 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms