Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 AC233702.5-201ENST00000584107 538 ntBASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 AL049637.2-201ENST00000641778 930 ntBASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 AC134043.2-201ENST00000624206 2238 ntBASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 CRYGFP-201ENST00000418459 633 ntBASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 UBE2SP1-201ENST00000450587 669 ntBASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 Z99916.2-201ENST00000604037 246 ntBASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
TCRBV7S3A2A0A539 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 AC034236.2-201ENST00000606662 1610 ntBASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 LTB4R2-202ENST00000528054 3092 ntBASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 AL096828.2-201ENST00000567259 1965 ntBASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TCRBV7S3A2A0A539 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 AC012618.2-201ENST00000428058 849 ntBASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 PHGDH-209ENST00000641074 1780 ntBASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TCRBV7S3A2A0A539 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.77■□□□□ 0.6
TCRBV7S3A2A0A539 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.77■□□□□ 0.6
TCRBV7S3A2A0A539 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.77■□□□□ 0.6
TCRBV7S3A2A0A539 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TCRBV7S3A2A0A539 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TCRBV7S3A2A0A539 AC036111.1-201ENST00000533973 1582 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms