Protein–RNA interactions for Protein: Q9Y696

CLIC4, Chloride intracellular channel protein 4, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4Q9Y696 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLIC4Q9Y696 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLIC4Q9Y696 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLIC4Q9Y696 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.98
CLIC4Q9Y696 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
CLIC4Q9Y696 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.14■□□□□ 0.98
CLIC4Q9Y696 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 MIR3180-5-201ENST00000583743 153 ntBASIC21.14■□□□□ 0.97
CLIC4Q9Y696 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CLIC4Q9Y696 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 UNC93B2-201ENST00000285383 730 ntBASIC21.13■□□□□ 0.97
CLIC4Q9Y696 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 AP003041.3-201ENST00000527151 707 ntBASIC21.13■□□□□ 0.97
CLIC4Q9Y696 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLIC4Q9Y696 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 REXO1L9P-201ENST00000604264 2108 ntBASIC21.12■□□□□ 0.97
CLIC4Q9Y696 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 AC008764.6-201ENST00000595909 2069 ntBASIC21.12■□□□□ 0.97
CLIC4Q9Y696 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLIC4Q9Y696 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.11■□□□□ 0.97
CLIC4Q9Y696 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 TSPY15P-201ENST00000457163 923 ntBASIC21.11■□□□□ 0.97
CLIC4Q9Y696 SNORA78-201ENST00000459373 127 ntBASIC21.11■□□□□ 0.97
CLIC4Q9Y696 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 AL353719.1-201ENST00000566847 864 ntBASIC21.11■□□□□ 0.97
CLIC4Q9Y696 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.11■□□□□ 0.97
CLIC4Q9Y696 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC21.1■□□□□ 0.97
CLIC4Q9Y696 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms