Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 AP006294.2-201ENST00000641667 209 ntBASIC16.95■□□□□ 0.3
DDX28Q9NUL7 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
DDX28Q9NUL7 AC104417.2-201ENST00000562989 1793 ntBASIC16.94■□□□□ 0.3
DDX28Q9NUL7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC141586.3-201ENST00000562166 1838 ntBASIC16.94■□□□□ 0.3
DDX28Q9NUL7 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 TUBB8P6-201ENST00000436895 1288 ntBASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC008403.3-201ENST00000598924 454 ntBASIC16.94■□□□□ 0.3
DDX28Q9NUL7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.94■□□□□ 0.3
DDX28Q9NUL7 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.93■□□□□ 0.3
DDX28Q9NUL7 WIZP1-201ENST00000531444 2299 ntBASIC16.93■□□□□ 0.3
DDX28Q9NUL7 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
DDX28Q9NUL7 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms