Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.7■□□□□ 0.42
PIF1Q9H611 RNA5SP413-201ENST00000516373 109 ntBASIC17.7■□□□□ 0.42
PIF1Q9H611 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PIF1Q9H611 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PIF1Q9H611 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.7■□□□□ 0.42
PIF1Q9H611 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
PIF1Q9H611 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.7■□□□□ 0.42
PIF1Q9H611 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PIF1Q9H611 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 AL162741.1-201ENST00000565563 1558 ntBASIC17.7■□□□□ 0.42
PIF1Q9H611 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PIF1Q9H611 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC17.69■□□□□ 0.42
PIF1Q9H611 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 ESPNP-201ENST00000270691 2015 ntBASIC17.69■□□□□ 0.42
PIF1Q9H611 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PIF1Q9H611 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.69■□□□□ 0.42
PIF1Q9H611 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 CD99P1-205ENST00000527459 561 ntBASIC17.69■□□□□ 0.42
PIF1Q9H611 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 C1QL1P1-201ENST00000568105 661 ntBASIC17.69■□□□□ 0.42
PIF1Q9H611 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.69■□□□□ 0.42
PIF1Q9H611 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.69■□□□□ 0.42
PIF1Q9H611 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 AC134043.2-201ENST00000624206 2238 ntBASIC17.69■□□□□ 0.42
PIF1Q9H611 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.69■□□□□ 0.42
PIF1Q9H611 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PIF1Q9H611 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.69■□□□□ 0.42
PIF1Q9H611 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.68■□□□□ 0.42
PIF1Q9H611 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.68■□□□□ 0.42
PIF1Q9H611 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 AC026366.1-201ENST00000488803 879 ntBASIC17.68■□□□□ 0.42
PIF1Q9H611 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.68■□□□□ 0.42
PIF1Q9H611 AP003097.1-201ENST00000530657 1135 ntBASIC17.68■□□□□ 0.42
PIF1Q9H611 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PIF1Q9H611 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.68■□□□□ 0.42
PIF1Q9H611 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.68■□□□□ 0.42
PIF1Q9H611 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.68■□□□□ 0.42
PIF1Q9H611 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PIF1Q9H611 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PIF1Q9H611 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.67■□□□□ 0.42
PIF1Q9H611 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PIF1Q9H611 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.67■□□□□ 0.42
PIF1Q9H611 POM121L13P-201ENST00000422362 380 ntBASIC17.67■□□□□ 0.42
PIF1Q9H611 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms